Information for 14-CCAAGCHTCCATT (Motif 26)

A G T C G T A C C G T A C G T A A C T G A G T C G C T A G C A T A G T C A G T C C G T A A C G T A C G T
Reverse Opposite:
G T C A C G T A A C G T A C T G A C T G C G T A C A G T A C T G A G T C A C G T A C G T A C T G C T A G
p-value:1e-8
log p-value:-2.020e+01
Information Content per bp:1.867
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.8 +/- 28.3bp
Average Position of motif in Background61.4 +/- 17.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCAAGCHTCCATT
-CAAGCTT-----
 A G T C G T A C C G T A C G T A A C T G A G T C G C T A G C A T A G T C A G T C C G T A A C G T A C G T
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CCAAGCHTCCATT---
----GCNGCCATCTTG
 A G T C G T A C C G T A C G T A A C T G A G T C G C T A G C A T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCAAGCHTCCATT-
---GTCCGCCATTA
 A G T C G T A C C G T A C G T A A C T G A G T C G C T A G C A T A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CCAAGCHTCCATT---
----GCCGCCATCTTG
 A G T C G T A C C G T A C G T A A C T G A G T C G C T A G C A T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CCAAGCHTCCATT
TGTTKCCTAGCAACM---
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A C G T A A C T G A G T C G C T A G C A T A G T C A G T C C G T A A C G T A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCAAGCHTCCATT--
SCAGYCADGCATGAC
 A G T C G T A C C G T A C G T A A C T G A G T C G C T A G C A T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CCAAGCHTCCATT
--CAGCC------
 A G T C G T A C C G T A C G T A A C T G A G T C G C T A G C A T A G T C A G T C C G T A A C G T A C G T
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCAAGCHTCCATT
-CACGCA------
 A G T C G T A C C G T A C G T A A C T G A G T C G C T A G C A T A G T C A G T C C G T A A C G T A C G T
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CCAAGCHTCCATT
TTCACGCATGAGTT
 A C G T A G T C G T A C C G T A C G T A A C T G A G T C G C T A G C A T A G T C A G T C C G T A A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PH0026.1_Duxbl/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CCAAGCHTCCATT
CGACCCAATCAACGGTG
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A C G T A A C T G A G T C G C T A G C A T A G T C A G T C C G T A A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G