Information for 19-AGGTCTGCGA (Motif 28)

C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A G T C C G T A A C T G C G T A A G T C A G T C A C G T
p-value:1e-6
log p-value:-1.602e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.0 +/- 30.4bp
Average Position of motif in Background42.8 +/- 8.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGGTCTGCGA
VBSYGTCTGG--
 A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C T G C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGTCTGCGA
CTGTCTGG--
 C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C T G C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGTCTGCGA
AGGCCTNG--
 C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C T G C G T A
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGTCTGCGA
CAACGTCCGCGG
 A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C T G C G T A
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGTCTGCGA-
-GGTCTGGCAT
 C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C T G C G T A A C G T
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

TBX15/MA0803.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGTCTGCGA
AGGTGTGA--
 C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C T G C G T A
C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGTCTGCGA
AGGTGTGA--
 C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C T G C G T A
C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCTGCGA
CAGGTGAGG--
 A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C T G C G T A
A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGTCTGCGA
TWGTCTGV--
 C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C T G C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGGTCTGCGA
ATCAAGGTCA----
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C A C G T A C T G A G T C A C T G C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T