Information for 5-GTCATTAGCA (Motif 6)

A T C G G A C T G T A C C G T A C A G T A G C T G C T A C T A G T A G C G T C A
Reverse Opposite:
A C G T A T C G G A T C C G A T C T G A G T C A A C G T C A T G C T G A T A G C
p-value:1e-17
log p-value:-4.120e+01
Information Content per bp:1.708
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif7.89%
Number of Background Sequences with motif970.5
Percentage of Background Sequences with motif2.05%
Average Position of motif in Targets49.1 +/- 26.4bp
Average Position of motif in Background49.3 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:GTCATTAGCA--
CTCATTTGCATW
 A T C G G A C T G T A C C G T A C A G T A G C T G C T A C T A G T A G C G T C A A C G T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GTCATTAGCA--
BTVATTWGCATA
 A T C G G A C T G T A C C G T A C A G T A G C T G C T A C T A G T A G C G T C A A C G T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

POU3F2/MA0787.1/Jaspar

Match Rank:3
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GTCATTAGCA---
-TAATTTGCATAA
 A T C G G A C T G T A C C G T A C A G T A G C T G C T A C T A G T A G C G T C A A C G T A C G T A C G T
A C G T C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

POU1F1/MA0784.1/Jaspar

Match Rank:4
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GTCATTAGCA----
CTAATTTGCATATT
 A T C G G A C T G T A C C G T A C A G T A G C T G C T A C T A G T A G C G T C A A C G T A C G T A C G T A C G T
G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T

EVX2/MA0888.1/Jaspar

Match Rank:5
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GTCATTAGCA
GGTAATTAGC-
 A C G T A T C G G A C T G T A C C G T A C A G T A G C T G C T A C T A G T A G C G T C A
T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:6
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GTCATTAGCA-----
TNTAATTTGCATACNA
 A C G T A T C G G A C T G T A C C G T A C A G T A G C T G C T A C T A G T A G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GTCATTAGCA-----
TNTAATTTGCATACNA
 A C G T A T C G G A C T G T A C C G T A C A G T A G C T G C T A C T A G T A G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

POU3F4/MA0789.1/Jaspar

Match Rank:8
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:GTCATTAGCA--
---ATTTGCATA
 A T C G G A C T G T A C C G T A C A G T A G C T G C T A C T A G T A G C G T C A A C G T A C G T
A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

EVX1/MA0887.1/Jaspar

Match Rank:9
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GTCATTAGCA
GGTAATTAGC-
 A C G T A T C G G A C T G T A C C G T A C A G T A G C T G C T A C T A G T A G C G T C A
T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GTCATTAGCA-----
TNTAATTTGCATANNN
 A C G T A T C G G A C T G T A C C G T A C A G T A G C T G C T A C T A G T A G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A