Information for 4-CTTAATGGST (Motif 5)

A T G C A G C T G C A T C T G A C G T A C A G T C A T G C T A G A T C G C A G T
Reverse Opposite:
G T C A T A G C G A T C G T A C G T C A C G A T A G C T C G T A C T G A T A C G
p-value:1e-18
log p-value:-4.371e+01
Information Content per bp:1.650
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif8.93%
Number of Background Sequences with motif1158.4
Percentage of Background Sequences with motif2.44%
Average Position of motif in Targets54.1 +/- 27.1bp
Average Position of motif in Background49.4 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:CTTAATGGST
GTTAATGGCC
 A T G C A G C T G C A T C T G A C G T A C A G T C A T G C T A G A T C G C A G T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PH0006.1_Barhl2/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--CTTAATGGST----
NNNTTAATTGGTTTTT
 A C G T A C G T A T G C A G C T G C A T C T G A C G T A C A G T C A T G C T A G A T C G C A G T A C G T A C G T A C G T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CTTAATGGST
-CTAATKGV-
 A T G C A G C T G C A T C T G A C G T A C A G T C A T G C T A G A T C G C A G T
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:4
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CTTAATGGST
GCTAATTGCT
 A T G C A G C T G C A T C T G A C G T A C A G T C A T G C T A G A T C G C A G T
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

Hmx1/MA0896.1/Jaspar

Match Rank:5
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----CTTAATGGST---
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A T G C A G C T G C A T C T G A C G T A C A G T C A T G C T A G A T C G C A G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:6
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----CTTAATGGST---
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A T G C A G C T G C A T C T G A C G T A C A G T C A T G C T A G A T C G C A G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

VENTX/MA0724.1/Jaspar

Match Rank:7
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CTTAATGGST
-CTAATCGNT
 A T G C A G C T G C A T C T G A C G T A C A G T C A T G C T A G A T C G C A G T
A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

PH0088.1_Isl2/Jaspar

Match Rank:8
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--CTTAATGGST----
AAATTAATTGATTTNG
 A C G T A C G T A T G C A G C T G C A T C T G A C G T A C A G T C A T G C T A G A T C G C A G T A C G T A C G T A C G T A C G T
C T G A G C T A G T C A G A C T G C A T C G T A C G T A A C G T A C G T C T A G T C G A C A G T C A G T C A G T C G A T C A T G

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CTTAATGGST
-NTAATTGN-
 A T G C A G C T G C A T C T G A C G T A C A G T C A T G C T A G A T C G C A G T
A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T

BSX/MA0876.1/Jaspar

Match Rank:10
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CTTAATGGST
-NTAATTGG-
 A T G C A G C T G C A T C T G A C G T A C A G T C A T G C T A G A T C G C A G T
A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G A C G T