Information for 3-ACAGCAGGAG (Motif 3)

G C T A G T A C T G C A T A C G A T G C G C T A C A T G T A C G T C G A T C A G
Reverse Opposite:
A G T C A G C T A T G C G T A C C G A T T A C G A T G C A C G T C A T G C G A T
p-value:1e-23
log p-value:-5.422e+01
Information Content per bp:1.663
Number of Target Sequences with motif102.0
Percentage of Target Sequences with motif13.20%
Number of Background Sequences with motif1970.4
Percentage of Background Sequences with motif4.16%
Average Position of motif in Targets49.0 +/- 28.7bp
Average Position of motif in Background50.7 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-ACAGCAGGAG-
CACAGCAGGGGG
 A C G T G C T A G T A C T G C A T A C G A T G C G C T A C A T G T A C G T C G A T C A G A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCAGGAG---
DCHCAGCAGGRGGCC
 A C G T A C G T G C T A G T A C T G C A T A C G A T G C G C T A C A T G T A C G T C G A T C A G A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.84
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGGAG-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T G C T A G T A C T G C A T A C G A T G C G C T A C A T G T A C G T C G A T C A G A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGGAG-
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T G C T A G T A C T G C A T A C G A T G C G C T A C A T G T A C G T C G A T C A G A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGGAG-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T G C T A G T A C T G C A T A C G A T G C G C T A C A T G T A C G T C G A T C A G A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCAGGAG
DCTCAGCAGG--
 A C G T A C G T G C T A G T A C T G C A T A C G A T G C G C T A C A T G T A C G T C G A T C A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACAGCAGGAG
NAACAGCTGG--
 A C G T A C G T G C T A G T A C T G C A T A C G A T G C G C T A C A T G T A C G T C G A T C A G
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCAGGAG---
CACAGCGGGGGGTC
 A C G T G C T A G T A C T G C A T A C G A T G C G C T A C A T G T A C G T C G A T C A G A C G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:ACAGCAGGAG---
-SDGCAGGTGCNS
 G C T A G T A C T G C A T A C G A T G C G C T A C A T G T A C G T C G A T C A G A C G T A C G T A C G T
A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Tcf12/MA0521.1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ACAGCAGGAG
AACAGCTGCAG
 A C G T G C T A G T A C T G C A T A C G A T G C G C T A C A T G T A C G T C G A T C A G
T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G