Information for 6-AASAAAGGKRTCTTTM (Motif 13)

G T C A C G T A A T G C C G T A T C G A C G T A A T C G C T A G A C G T C T A G A G C T A G T C C A G T C A G T A C G T G T C A
Reverse Opposite:
A C G T C G T A G T C A G C T A A C T G C T G A A G T C G T C A G A T C A T G C A C G T A G C T A C G T A T C G A C G T A C G T
p-value:1e-12
log p-value:-2.883e+01
Information Content per bp:1.763
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif16.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets64.0 +/- 22.5bp
Average Position of motif in Background49.4 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AASAAAGGKRTCTTTM
-ACAAAGGNBCCT---
 G T C A C G T A A T G C C G T A T C G A C G T A A T C G C T A G A C G T C T A G A G C T A G T C C A G T C A G T A C G T G T C A
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AASAAAGGKRTCTTTM
AAAACAAAGG--------
 A C G T A C G T G T C A C G T A A T G C C G T A T C G A C G T A A T C G C T A G A C G T C T A G A G C T A G T C C A G T C A G T A C G T G T C A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AASAAAGGKRTCTTTM
GGAACAAAGR--------
 A C G T A C G T G T C A C G T A A T G C C G T A T C G A C G T A A T C G C T A G A C G T C T A G A G C T A G T C C A G T C A G T A C G T G T C A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AASAAAGGKRTCTTTM
AGAAGAACAAAGGACTA----
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A A T G C C G T A T C G A C G T A A T C G C T A G A C G T C T A G A G C T A G T C C A G T C A G T A C G T G T C A
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AASAAAGGKRTCTTTM
AACAAAGG--------
 G T C A C G T A A T G C C G T A T C G A C G T A A T C G C T A G A C G T C T A G A G C T A G T C C A G T C A G T A C G T G T C A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AASAAAGGKRTCTTTM
ATAAGAACAAAGGACTA----
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A A T G C C G T A T C G A C G T A A T C G C T A G A C G T C T A G A G C T A G T C C A G T C A G T A C G T G T C A
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AASAAAGGKRTCTTTM
VRRACAAWGG--------
 A C G T A C G T G T C A C G T A A T G C C G T A T C G A C G T A A T C G C T A G A C G T C T A G A G C T A G T C C A G T C A G T A C G T G T C A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AASAAAGGKRTCTTTM
-ACAAAG---------
 G T C A C G T A A T G C C G T A T C G A C G T A A T C G C T A G A C G T C T A G A G C T A G T C C A G T C A G T A C G T G T C A
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AASAAAGGKRTCTTTM
RACAAWGG--------
 G T C A C G T A A T G C C G T A T C G A C G T A A T C G C T A G A C G T C T A G A G C T A G T C C A G T C A G T A C G T G T C A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AASAAAGGKRTCTTTM-
GACAGAGATATCAGTGT
 G T C A C G T A A T G C C G T A T C G A C G T A A T C G C T A G A C G T C T A G A G C T A G T C C A G T C A G T A C G T G T C A A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T