Information for 9-TTAACATAAC (Motif 10)

A G C T G A C T G C T A C T G A T A G C T G C A A C G T C T G A C T G A A G T C
Reverse Opposite:
T C A G G A C T G A C T T G C A A C G T A T C G G A C T C G A T C T G A T C G A
p-value:1e-15
log p-value:-3.607e+01
Information Content per bp:1.587
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.59%
Number of Background Sequences with motif91.9
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets50.5 +/- 27.1bp
Average Position of motif in Background51.3 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----TTAACATAAC
BTVATTWGCATA--
 A C G T A C G T A C G T A C G T A G C T G A C T G C T A C T G A T A G C T G C A A C G T C T G A C T G A A G T C
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:2
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---TTAACATAAC
TAATTTGCATAA-
 A C G T A C G T A C G T A G C T G A C T G C T A C T G A T A G C T G C A A C G T C T G A C T G A A G T C
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TTAACATAAC
ATTTGCATA--
 A C G T A G C T G A C T G C T A C T G A T A G C T G C A A C G T C T G A C T G A A G T C
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:4
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--TTAACATAAC
AATTTGCATANT
 A C G T A C G T A G C T G A C T G C T A C T G A T A G C T G C A A C G T C T G A C T G A A G T C
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

POU3F2/MA0787.1/Jaspar

Match Rank:5
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TTAACATAAC
TAATTTGCATAA-
 A C G T A C G T A C G T A G C T G A C T G C T A C T G A T A G C T G C A A C G T C T G A C T G A A G T C
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TTAACATAAC
ATTTGCATA--
 A C G T A G C T G A C T G C T A C T G A T A G C T G C A A C G T C T G A C T G A A G T C
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:7
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTAACATAAC
AAATTAGCATAAT
 A C G T A C G T A C G T A G C T G A C T G C T A C T G A T A G C T G C A A C G T C T G A C T G A A G T C
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TTAACATAAC
ATTTGCATAA-
 A C G T A G C T G A C T G C T A C T G A T A G C T G C A A C G T C T G A C T G A A G T C
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TTAACATAAC
CTCATTTGCATW--
 A C G T A C G T A C G T A C G T A G C T G A C T G C T A C T G A T A G C T G C A A C G T C T G A C T G A A G T C
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T

POU1F1/MA0784.1/Jaspar

Match Rank:10
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTAACATAAC
CTAATTTGCATATT
 A C G T A C G T A C G T A C G T A G C T G A C T G C T A C T G A T A G C T G C A A C G T C T G A C T G A A G T C
G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T