Information for 1-CCTTTGTTAT (Motif 1)

A T G C G A T C C G A T C G A T A C G T A T C G G C A T G A C T G C T A A G C T
Reverse Opposite:
T C G A C G A T C T G A C G T A T A G C G T C A G C T A G C T A C T A G T A C G
p-value:1e-66
log p-value:-1.524e+02
Information Content per bp:1.631
Number of Target Sequences with motif223.0
Percentage of Target Sequences with motif28.85%
Number of Background Sequences with motif3698.1
Percentage of Background Sequences with motif7.80%
Average Position of motif in Targets51.9 +/- 24.5bp
Average Position of motif in Background49.3 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTAT
CCWTTGTY--
 A T G C G A T C C G A T C G A T A C G T A T C G G C A T G A C T G C T A A G C T
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTTAT---
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A T G C G A T C C G A T C G A T A C G T A T C G G C A T G A C T G C T A A G C T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTAT
CCWTTGTYYB
 A T G C G A T C C G A T C G A T A C G T A T C G G C A T G A C T G C T A A G C T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTTAT---
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A T G C G A T C C G A T C G A T A C G T A T C G G C A T G A C T G C T A A G C T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTAT
CCATTGTTNY
 A T G C G A T C C G A T C G A T A C G T A T C G G C A T G A C T G C T A A G C T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTAT
CCTTTGTTTT
 A T G C G A T C C G A T C G A T A C G T A T C G G C A T G A C T G C T A A G C T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTAT
CCTTTGTT--
 A T G C G A T C C G A T C G A T A C G T A T C G G C A T G A C T G C T A A G C T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTAT
CCATTGTTTT
 A T G C G A T C C G A T C G A T A C G T A T C G G C A T G A C T G C T A A G C T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-CCTTTGTTAT
NCCATTGTTC-
 A C G T A T G C G A T C C G A T C G A T A C G T A T C G G C A T G A C T G C T A A G C T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.88
Offset:1
Orientation:forward strand
Alignment:CCTTTGTTAT
-CTTTGT---
 A T G C G A T C C G A T C G A T A C G T A T C G G C A T G A C T G C T A A G C T
A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T