Information for 1-VAKAACAAWG (Motif 2)

T G A C T G C A C A G T C T G A C G T A A T G C C G T A T G C A G C A T C T A G
Reverse Opposite:
G A T C C G T A A C G T C G A T A T C G C G A T G A C T G T C A A C G T A C T G
p-value:1e-53
log p-value:-1.227e+02
Information Content per bp:1.598
Number of Target Sequences with motif250.0
Percentage of Target Sequences with motif33.69%
Number of Background Sequences with motif2731.0
Percentage of Background Sequences with motif11.96%
Average Position of motif in Targets50.5 +/- 25.7bp
Average Position of motif in Background50.3 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:1
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:VAKAACAAWG-
-RNAACAATGG
 T G A C T G C A C A G T C T G A C G T A A T G C C G T A T G C A G C A T C T A G A C G T
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:VAKAACAAWG-
-VRRACAAWGG
 T G A C T G C A C A G T C T G A C G T A A T G C C G T A T G C A G C A T C T A G A C G T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:VAKAACAAWG-
---RACAAWGG
 T G A C T G C A C A G T C T G A C G T A A T G C C G T A T G C A G C A T C T A G A C G T
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:VAKAACAAWG-
-AAAACAATGG
 T G A C T G C A C A G T C T G A C G T A A T G C C G T A T G C A G C A T C T A G A C G T
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

SOX10/MA0442.1/Jaspar

Match Rank:5
Score:0.89
Offset:4
Orientation:reverse strand
Alignment:VAKAACAAWG
----ACAAAG
 T G A C T G C A C A G T C T G A C G T A A T G C C G T A T G C A G C A T C T A G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:VAKAACAAWG
---AACAAT-
 T G A C T G C A C A G T C T G A C G T A A T G C C G T A T G C A G C A T C T A G
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--VAKAACAAWG-----
ATAAGAACAAAGGACTA
 A C G T A C G T T G A C T G C A C A G T C T G A C G T A A T G C C G T A T G C A G C A T C T A G A C G T A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:VAKAACAAWG-
-VRAACAATGG
 T G A C T G C A C A G T C T G A C G T A A T G C C G T A T G C A G C A T C T A G A C G T
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--VAKAACAAWG-----
AGAAGAACAAAGGACTA
 A C G T A C G T T G A C T G C A C A G T C T G A C G T A A T G C C G T A T G C A G C A T C T A G A C G T A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.88
Offset:2
Orientation:forward strand
Alignment:VAKAACAAWG--
--RAACAATGGN
 T G A C T G C A C A G T C T G A C G T A A T G C C G T A T G C A G C A T C T A G A C G T A C G T
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C