Information for 5-TGGCAAGGAGGCA (Motif 8)

A C G T C A T G A T C G A T G C C G T A C T G A A C T G A T C G C T G A A C T G A C T G A G T C G T C A
Reverse Opposite:
A C G T A C T G G T A C G T A C A G C T A T G C A G T C A G C T A C G T A T C G A T G C G T A C C G T A
p-value:1e-10
log p-value:-2.380e+01
Information Content per bp:1.838
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.2 +/- 22.2bp
Average Position of motif in Background27.5 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGGCAAGGAGGCA
TTGCCAAG------
 A C G T A C G T C A T G A T C G A T G C C G T A C T G A A C T G A T C G C T G A A C T G A C T G A G T C G T C A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGCAAGGAGGCA-
TGGCACCATGCCAA
 A C G T C A T G A T C G A T G C C G T A C T G A A C T G A T C G C T G A A C T G A C T G A G T C G T C A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGGCAAGGAGGCA
CTGGCAGNCTGCCA
 A C G T A C G T C A T G A T C G A T G C C G T A C T G A A C T G A T C G C T G A A C T G A C T G A G T C G T C A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGGCAAGGAGGCA
GGTGCCAAGT-----
 A C G T A C G T A C G T C A T G A T C G A T G C C G T A C T G A A C T G A T C G C T G A A C T G A C T G A G T C G T C A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGGCAAGGAGGCA--
TTGGCANNNTGCCAAG
 A C G T A C G T C A T G A T C G A T G C C G T A C T G A A C T G A T C G C T G A A C T G A C T G A G T C G T C A A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGGCAAGGAGGCA-----
-GGCGAGGGGTCAAGGGC
 A C G T C A T G A T C G A T G C C G T A C T G A A C T G A T C G C T G A A C T G A C T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGGCAAGGAGGCA
CGTGCCAAG------
 A C G T A C G T A C G T C A T G A T C G A T G C C G T A C T G A A C T G A T C G C T G A A C T G A C T G A G T C G T C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGGCAAGGAGGCA
-TGTCAGGGGGCG
 A C G T C A T G A T C G A T G C C G T A C T G A A C T G A T C G C T G A A C T G A C T G A G T C G T C A
A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAAGGAGGCA
KGTTGCTAGGMAACA
 A C G T A C G T A C G T C A T G A T C G A T G C C G T A C T G A A C T G A T C G C T G A A C T G A C T G A G T C G T C A
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGCAAGGAGGCA
AAGGCAAGTGT---
 A C G T A C G T C A T G A T C G A T G C C G T A C T G A A C T G A T C G C T G A A C T G A C T G A G T C G T C A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T