Information for 7-CCCATTGRCT (Motif 6)

T G A C A G T C A T G C C G T A A C G T A C G T A C T G C T A G A G T C A G C T
Reverse Opposite:
C T G A C T A G A G T C A G T C C G T A C G T A A C G T A T C G C T A G A C T G
p-value:1e-10
log p-value:-2.464e+01
Information Content per bp:1.810
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.25%
Number of Background Sequences with motif523.1
Percentage of Background Sequences with motif1.11%
Average Position of motif in Targets45.5 +/- 31.1bp
Average Position of motif in Background49.5 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:CCCATTGRCT
CCGATTGGCT
 T G A C A G T C A T G C C G T A A C G T A C G T A C T G C T A G A G T C A G C T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CCCATTGRCT---
-TGATTGGCTANN
 T G A C A G T C A T G C C G T A A C G T A C G T A C T G C T A G A G T C A G C T A C G T A C G T A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CCCATTGRCT-
-CCATTGTTYB
 T G A C A G T C A T G C C G T A A C G T A C G T A C T G C T A G A G T C A G C T A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCCATTGRCT-
-CCATTGTTTT
 T G A C A G T C A T G C C G T A A C G T A C G T A C T G C T A G A G T C A G C T A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CCCATTGRCT---
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T T G A C A G T C A T G C C G T A A C G T A C G T A C T G C T A G A G T C A G C T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCCATTGRCT
-CCATTGTTC
 T G A C A G T C A T G C C G T A A C G T A C G T A C T G C T A G A G T C A G C T
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCCATTGRCT
NCCATTGTTY
 T G A C A G T C A T G C C G T A A C G T A C G T A C T G C T A G A G T C A G C T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

NFYB/MA0502.1/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCCATTGRCT-----
CTGATTGGTCNATTT
 T G A C A G T C A T G C C G T A A C G T A C G T A C T G C T A G A G T C A G C T A C G T A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CCCATTGRCT---
NNNCCATTGTGTNAN
 A C G T A C G T T G A C A G T C A T G C C G T A A C G T A C G T A C T G C T A G A G T C A G C T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCCATTGRCT
CTCATTGTC-
 T G A C A G T C A T G C C G T A A C G T A C G T A C T G C T A G A G T C A G C T
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T