Information for 7-TGGTCCGGTTGCC (Motif 10)

C G A T A C T G A C T G C A G T A T G C A G T C C T A G A C T G A C G T A C G T A T C G A G T C A G T C
Reverse Opposite:
A C T G A C T G A T G C G T C A G T C A T A G C A G T C A C T G A T C G G T C A A G T C G T A C C G T A
p-value:1e-9
log p-value:-2.191e+01
Information Content per bp:1.819
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets56.7 +/- 28.8bp
Average Position of motif in Background60.1 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TGGTCCGGTTGCC--
----NNACTTGCCTT
 C G A T A C T G A C T G C A G T A T G C A G T C C T A G A C T G A C G T A C G T A T C G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGGTCCGGTTGCC-
TTGGCATGGTGCCA
 C G A T A C T G A C T G C A G T A T G C A G T C C T A G A C T G A C G T A C G T A T C G A G T C A G T C A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGTCCGGTTGCC--
CTTGGCANNNTGCCAA
 A C G T C G A T A C T G A C T G C A G T A T G C A G T C C T A G A C T G A C G T A C G T A T C G A G T C A G T C A C G T A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGGTCCGGTTGCC---
-GGTCANNGTGACCTN
 C G A T A C T G A C T G C A G T A T G C A G T C C T A G A C T G A C G T A C G T A T C G A G T C A G T C A C G T A C G T A C G T
A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGGTCCGGTTGCC--
-TGGCAGNCTGCCAG
 C G A T A C T G A C T G C A G T A T G C A G T C C T A G A C T G A C G T A C G T A T C G A G T C A G T C A C G T A C G T
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.52
Offset:8
Orientation:forward strand
Alignment:TGGTCCGGTTGCC----
--------CTGCCCGCA
 C G A T A C T G A C T G C A G T A T G C A G T C C T A G A C T G A C G T A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:TGGTCCGGTTGCC----
-----CTGTTGCTAGGS
 C G A T A C T G A C T G C A G T A T G C A G T C C T A G A C T G A C G T A C G T A T C G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

ESR2/MA0258.2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TGGTCCGGTTGCC--
AGGTCACCCTGACCT
 C G A T A C T G A C T G C A G T A T G C A G T C C T A G A C T G A C G T A C G T A T C G A G T C A G T C A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

PB0051.1_Osr2_1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TGGTCCGGTTGCC---
ATGTACAGTAGCAAAG
 C G A T A C T G A C T G C A G T A T G C A G T C C T A G A C T G A C G T A C G T A T C G A G T C A G T C A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.50
Offset:8
Orientation:forward strand
Alignment:TGGTCCGGTTGCC---
--------TTGCCAAG
 C G A T A C T G A C T G C A G T A T G C A G T C C T A G A C T G A C G T A C G T A T C G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G