Information for 3-THAAKCATTCTTYMWT (Motif 5)

A G C T G T A C G T C A C G T A C A G T G T A C C G T A C G A T A C G T G T A C A C G T A G C T A G C T G T A C C G T A C G A T
Reverse Opposite:
C G T A C G A T A C T G C T G A C T G A C G T A C A T G T G C A C G T A A C G T A C T G G T C A G C A T C A G T C A T G C T G A
p-value:1e-13
log p-value:-3.158e+01
Information Content per bp:1.701
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif13.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets39.6 +/- 24.8bp
Average Position of motif in Background39.1 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:THAAKCATTCTTYMWT
---NCCATTGTTY---
 A G C T G T A C G T C A C G T A C A G T G T A C C G T A C G A T A C G T G T A C A C G T A G C T A G C T G T A C C G T A C G A T
A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:THAAKCATTCTTYMWT
ANNTCCATTGTTCNNN
 A G C T G T A C G T C A C G T A C A G T G T A C C G T A C G A T A C G T G T A C A C G T A G C T A G C T G T A C C G T A C G A T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

POL002.1_INR/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:THAAKCATTCTTYMWT
----TCAGTCTT----
 A G C T G T A C G T C A C G T A C A G T G T A C C G T A C G A T A C G T G T A C A C G T A G C T A G C T G T A C C G T A C G A T
A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:THAAKCATTCTTYMWT
----CCATTGTTTT--
 A G C T G T A C G T C A C G T A C A G T G T A C C G T A C G A T A C G T G T A C A C G T A G C T A G C T G T A C C G T A C G A T
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---THAAKCATTCTTYMWT
TCACCCATCAATAAACA--
 A C G T A C G T A C G T A G C T G T A C G T C A C G T A C A G T G T A C C G T A C G A T A C G T G T A C A C G T A G C T A G C T G T A C C G T A C G A T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:THAAKCATTCTTYMWT
----CCATTGTTYB--
 A G C T G T A C G T C A C G T A C A G T G T A C C G T A C G A T A C G T G T A C A C G T A G C T A G C T G T A C C G T A C G A T
A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:THAAKCATTCTTYMWT
----CCWTTGTYYB--
 A G C T G T A C G T C A C G T A C A G T G T A C C G T A C G A T A C G T G T A C A C G T A G C T A G C T G T A C C G T A C G A T
A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:THAAKCATTCTTYMWT--
-CNNNTATTGTTCNNNNN
 A G C T G T A C G T C A C G T A C A G T G T A C C G T A C G A T A C G T G T A C A C G T A G C T A G C T G T A C C G T A C G A T A C G T A C G T
A C G T A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:THAAKCATTCTTYMWT--
--TTCAATTGTTCTAAAA
 A G C T G T A C G T C A C G T A C A G T G T A C C G T A C G A T A C G T G T A C A C G T A G C T A G C T G T A C C G T A C G A T A C G T A C G T
A C G T A C G T A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

PB0074.1_Sox8_1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:THAAKCATTCTTYMWT-
GTATCTATTGTTCTTTA
 A G C T G T A C G T C A C G T A C A G T G T A C C G T A C G A T A C G T G T A C A C G T A G C T A G C T G T A C C G T A C G A T A C G T
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A