Information for 17-TRTWARGRCAGAA (Motif 30)

A C G T C T G A A C G T C G A T C G T A C T A G A C T G C T A G A G T C C G T A A C T G C G T A C G T A
Reverse Opposite:
C G A T A C G T A G T C A C G T A C T G A G T C A G T C G A T C A C G T C G T A C G T A A G C T C G T A
p-value:1e-8
log p-value:-1.936e+01
Information Content per bp:1.876
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.7 +/- 27.7bp
Average Position of motif in Background45.1 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TRTWARGRCAGAA
--TNNGGGCAG--
A C G T C T G A A C G T C G A T C G T A C T A G A C T G C T A G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TRTWARGRCAGAA
--TRAGGTCA---
A C G T C T G A A C G T C G A T C G T A C T A G A C T G C T A G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TRTWARGRCAGAA-
----ATGCCAGACN
A C G T C T G A A C G T C G A T C G T A C T A G A C T G C T A G A G T C C G T A A C T G C G T A C G T A A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0129.1_Glis2_2/Jaspar

Match Rank:4
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TRTWARGRCAGAA
AATATTAATAAAGA-
A C G T A C G T A C G T C T G A A C G T C G A T C G T A C T A G A C T G C T A G A G T C C G T A A C T G C G T A C G T A
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A A C G T

PB0096.1_Zfp187_1/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TRTWARGRCAGAA
TTATTAGTACATAN
A C G T A C G T C T G A A C G T C G A T C G T A C T A G A C T G C T A G A G T C C G T A A C T G C G T A C G T A
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A

PB0032.1_IRC900814_1/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TRTWARGRCAGAA---
ATTTACGACAAATAGC
A C G T C T G A A C G T C G A T C G T A C T A G A C T G C T A G A G T C C G T A A C T G C G T A C G T A A C G T A C G T A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:TRTWARGRCAGAA
------CACAGN-
A C G T C T G A A C G T C G A T C G T A C T A G A C T G C T A G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.50
Offset:3
Orientation:forward strand
Alignment:TRTWARGRCAGAA
---AAGGTCAC--
A C G T C T G A A C G T C G A T C G T A C T A G A C T G C T A G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-TRTWARGRCAGAA
NTTTTACGAC----
A C G T A C G T C T G A A C G T C G A T C G T A C T A G A C T G C T A G A G T C C G T A A C T G C G T A C G T A
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T A C G T A C G T A C G T

SRF/MA0083.3/Jaspar

Match Rank:10
Score:0.49
Offset:-6
Orientation:forward strand
Alignment:------TRTWARGRCAGAA
TGACCATATATGGTCA---
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T C G A T C G T A C T A G A C T G C T A G A G T C C G T A A C T G C G T A C G T A
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A A C G T A C G T A C G T