Information for 12-TTTAAAAKKAGGKGAG (Motif 19)

C G A T A G C T A C G T G T C A G T C A C G T A C T G A A C G T A C T G C G T A C A T G A C T G A C G T A T C G C T G A A T C G
Reverse Opposite:
A T G C A G C T A T G C G T C A A G T C G T A C A C G T G T A C G T C A A G C T A C G T A C G T A C G T G T C A C T G A C G T A
p-value:1e-10
log p-value:-2.346e+01
Information Content per bp:1.755
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.7 +/- 21.2bp
Average Position of motif in Background31.4 +/- 13.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TTTAAAAKKAGGKGAG
--TATAAGTAGGTCAA
 C G A T A G C T A C G T G T C A G T C A C G T A C T G A A C G T A C T G C G T A C A T G A C T G A C G T A T C G C T G A A T C G
A C G T A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TTTAAAAKKAGGKGAG
-----AAYTAGGTCA-
 C G A T A G C T A C G T G T C A G T C A C G T A C T G A A C G T A C T G C G T A C A T G A C T G A C G T A T C G C T G A A T C G
A C G T A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TTTAAAAKKAGGKGAG
GNCTATAAAAGG-------
 A C G T A C G T A C G T C G A T A G C T A C G T G T C A G T C A C G T A C T G A A C G T A C T G C G T A C A T G A C T G A C G T A T C G C T G A A T C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TTTAAAAKKAGGKGAG
CGGTTTCAAA---------
 A C G T A C G T A C G T C G A T A G C T A C G T G T C A G T C A C G T A C T G A A C G T A C T G C G T A C A T G A C T G A C G T A T C G C T G A A T C G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAAAKKAGGKGAG
NATTCAAAT---------
 A C G T A C G T C G A T A G C T A C G T G T C A G T C A C G T A C T G A A C G T A C T G C G T A C A T G A C T G A C G T A T C G C T G A A T C G
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TTTAAAAKKAGGKGAG
AAACATAATGAGGTTGC
 A C G T C G A T A G C T A C G T G T C A G T C A C G T A C T G A A C G T A C T G C G T A C A T G A C T G A C G T A T C G C T G A A T C G
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

JUND(var.2)/MA0492.1/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TTTAAAAKKAGGKGAG-
--AAAGATGATGTCATC
 C G A T A G C T A C G T G T C A G T C A C G T A C T G A A C G T A C T G C G T A C A T G A C T G A C G T A T C G C T G A A T C G A C G T
A C G T A C G T C G T A C T G A C G T A T C A G T C G A A C G T A C T G C G T A A G C T T C A G A G C T T G A C C G T A A G C T T G A C

JUN/MA0488.1/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TTTAAAAKKAGGKGAG
---AAGATGATGTCAT
 C G A T A G C T A C G T G T C A G T C A C G T A C T G A A C G T A C T G C G T A C A T G A C T G A C G T A T C G C T G A A T C G
A C G T A C G T A C G T C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TTTAAAAKKAGGKGAG
GTATAAAAGGCGGGG--
 A C G T C G A T A G C T A C G T G T C A G T C A C G T A C T G A A C G T A C T G C G T A C A T G A C T G A C G T A T C G C T G A A T C G
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TTTAAAAKKAGGKGAG
GTATAAAAGGCGGGG--
 A C G T C G A T A G C T A C G T G T C A G T C A C G T A C T G A A C G T A C T G C G T A C A T G A C T G A C G T A T C G C T G A A T C G
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T A C G T