Information for 6-CTGGATATAAATG (Motif 13)

A T G C A C G T C T A G T C A G G T C A C G A T C G T A C G A T G T C A C G T A C G T A A C G T A C T G
Reverse Opposite:
A G T C G T C A A C G T G A C T A C G T G C T A A C G T G C T A A C G T A G T C A G T C C G T A A T C G
p-value:1e-11
log p-value:-2.580e+01
Information Content per bp:1.773
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif43.9
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets48.6 +/- 32.9bp
Average Position of motif in Background51.3 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGGATATAAATG--
ATGAATATTCATGAG
 A T G C A C G T C T A G T C A G G T C A C G A T C G T A C G A T G T C A C G T A C G T A A C G T A C T G A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CTGGATATAAATG------
----GTATAAAAGGCGGGG
 A T G C A C G T C T A G T C A G G T C A C G A T C G T A C G A T G T C A C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CTGGATATAAATG------
----GTATAAAAGGCGGGG
 A T G C A C G T C T A G T C A G G T C A C G A T C G T A C G A T G T C A C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTGGATATAAATG-
YATGCATATRCATRT
 A C G T A T G C A C G T C T A G T C A G G T C A C G A T C G T A C G A T G T C A C G T A C G T A A C G T A C T G A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGGATATAAATG--
--GGCCATAAATCAC
 A T G C A C G T C T A G T C A G G T C A C G A T C G T A C G A T G T C A C G T A C G T A A C G T A C T G A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTGGATATAAATG----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A T G C A C G T C T A G T C A G G T C A C G A T C G T A C G A T G T C A C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGGATATAAATG-
--GGCCATAAATCA
 A T G C A C G T C T A G T C A G G T C A C G A T C G T A C G A T G T C A C G T A C G T A A C G T A C T G A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTGGATATAAATG----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A T G C A C G T C T A G T C A G G T C A C G A T C G T A C G A T G T C A C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTGGATATAAATG-
--GGCCATAAATCA
 A T G C A C G T C T A G T C A G G T C A C G A T C G T A C G A T G T C A C G T A C G T A A C G T A C T G A C G T
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTGGATATAAATG
ATTTGCATAACAAAG
 A C G T A C G T A T G C A C G T C T A G T C A G G T C A C G A T C G T A C G A T G T C A C G T A C G T A A C G T A C T G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G