Information for 1-CTTAAAGGGG (Motif 1)

A T G C C G A T C G A T C G T A C G T A C G T A C T A G C T A G T A C G T A C G
Reverse Opposite:
A T G C A T G C A G T C A G T C C G A T A C G T C G A T G C T A C G T A T A C G
p-value:1e-12
log p-value:-2.990e+01
Information Content per bp:1.751
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif13.04%
Number of Background Sequences with motif110.4
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets57.8 +/- 24.9bp
Average Position of motif in Background53.5 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTTAAAGGGG
GNCTATAAAAGG--
 A C G T A C G T A C G T A C G T A T G C C G A T C G A T C G T A C G T A C G T A C T A G C T A G T A C G T A C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T

PB0184.1_Tbp_2/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CTTAAAGGGG
GNNCGCTTAAATCGG
 A C G T A C G T A C G T A C G T A C G T A T G C C G A T C G A T C G T A C G T A C G T A C T A G C T A G T A C G T A C G
C A T G T A C G C A G T G T A C A T C G T A G C C G A T C A G T C G T A C G T A C T G A G C A T A T G C T A C G A C T G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTTAAAGGGG
TTTAATTGCN
 A T G C C G A T C G A T C G T A C G T A C G T A C T A G C T A G T A C G T A C G
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

BARHL2/MA0635.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTTAAAGGGG
GCTAAACGGT
 A T G C C G A T C G A T C G T A C G T A C G T A C T A G C T A G T A C G T A C G
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTTAAAGGGG
DGWTTTATGRCN
 A C G T A C G T A T G C C G A T C G A T C G T A C G T A C G T A C T A G C T A G T A C G T A C G
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTTAAAGGGG
GTTAATGGCC
 A T G C C G A T C G A T C G T A C G T A C G T A C T A G C T A G T A C G T A C G
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Barhl1/MA0877.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTTAAAGGGG
GCTAATTGCT
 A T G C C G A T C G A T C G T A C G T A C G T A C T A G C T A G T A C G T A C G
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTTAAAGGGG
ACATCAAAGGNA
 A C G T A C G T A T G C C G A T C G A T C G T A C G T A C G T A C T A G C T A G T A C G T A C G
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTTAAAGGGG
ACATCAAAGG--
 A C G T A C G T A T G C C G A T C G A T C G T A C G T A C G T A C T A G C T A G T A C G T A C G
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTTAAAGGGG
ACWTCAAAGG--
 A C G T A C G T A T G C C G A T C G A T C G T A C G T A C G T A C T A G C T A G T A C G T A C G
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T