Information for 23-ATGCAGTCTGCATGCA (Motif 32)

G T C A A C G T A T C G A G T C C G T A A T C G C G A T T A G C C G A T A T C G A G T C C G T A A C G T A C T G A G T C C T G A
Reverse Opposite:
A G C T C T A G A G T C C G T A A C G T A C T G A T G C C G T A A C T G C G T A A T G C C G A T A C T G A T G C C G T A A C G T
p-value:1e-6
log p-value:-1.448e+01
Information Content per bp:1.853
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.7 +/- 27.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ATGCAGTCTGCATGCA
ATGCATWATGCATRW-
 G T C A A C G T A T C G A G T C C G T A A T C G C G A T T A G C C G A T A T C G A G T C C G T A A C G T A C T G A G T C C T G A
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATGCAGTCTGCATGCA
ATGAATWATTCATGA-
 G T C A A C G T A T C G A G T C C G T A A T C G C G A T T A G C C G A T A T C G A G T C C G T A A C G T A C T G A G T C C T G A
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ATGCAGTCTGCATGCA-
NTNNCGTATCCAAGTNN
 G T C A A C G T A T C G A G T C C G T A A T C G C G A T T A G C C G A T A T C G A G T C C G T A A C G T A C T G A G T C C T G A A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ATGCAGTCTGCATGCA
-TGAATTATGCAT---
 G T C A A C G T A T C G A G T C C G T A A T C G C G A T T A G C C G A T A T C G A G T C C G T A A C G T A C T G A G T C C T G A
A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:ATGCAGTCTGCATGCA
---CTGTCTGG-----
 G T C A A C G T A T C G A G T C C G T A A T C G C G A T T A G C C G A T A T C G A G T C C G T A A C G T A C T G A G T C C T G A
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:forward strand
Alignment:ATGCAGTCTGCATGCA-----
----AATATACATGTAATATA
 G T C A A C G T A T C G A G T C C G T A A T C G C G A T T A G C C G A T A T C G A G T C C G T A A C G T A C T G A G T C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:ATGCAGTCTGCATGCA
-VBSYGTCTGG-----
 G T C A A C G T A T C G A G T C C G T A A T C G C G A T T A G C C G A T A T C G A G T C C G T A A C G T A C T G A G T C C T G A
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:ATGCAGTCTGCATGCA-----
----AAAATACATGTAATACT
 G T C A A C G T A T C G A G T C C G T A A T C G C G A T T A G C C G A T A T C G A G T C C G T A A C G T A C T G A G T C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:ATGCAGTCTGCATGCA
----DCTCAGCAGG--
 G T C A A C G T A T C G A G T C C G T A A T C G C G A T T A G C C G A T A T C G A G T C C G T A A C G T A C T G A G T C C T G A
A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

PH0085.1_Irx4/Jaspar

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:ATGCAGTCTGCATGCA-----
----AATATACATGTAAAACA
 G T C A A C G T A T C G A G T C C G T A A T C G C G A T T A G C C G A T A T C G A G T C C G T A A C G T A C T G A G T C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A