Information for 11-TWGCCTCTCSKRG (Motif 12)

A C G T C G A T A C T G A G T C A G T C C G A T A G T C A C G T G T A C A T C G A C T G C T A G A C T G
Reverse Opposite:
A G T C A G T C G T A C A T G C A C T G C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A
p-value:1e-11
log p-value:-2.593e+01
Information Content per bp:1.861
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.8 +/- 30.3bp
Average Position of motif in Background71.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TWGCCTCTCSKRG
NNACTTGCCTT------
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G A G T C A G T C C G A T A G T C A C G T G T A C A T C G A C T G C T A G A C T G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TWGCCTCTCSKRG
-AGCCACTCAAG-
 A C G T C G A T A C T G A G T C A G T C C G A T A G T C A C G T G T A C A T C G A C T G C T A G A C T G
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TWGCCTCTCSKRG
-AASCACTCAA--
 A C G T C G A T A C T G A G T C A G T C C G A T A G T C A C G T G T A C A T C G A C T G C T A G A C T G
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TWGCCTCTCSKRG
--RSCACTYRAG-
 A C G T C G A T A C T G A G T C A G T C C G A T A G T C A C G T G T A C A T C G A C T G C T A G A C T G
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TWGCCTCTCSKRG
--NSCACTYVAV-
 A C G T C G A T A C T G A G T C A G T C C G A T A G T C A C G T G T A C A T C G A C T G C T A G A C T G
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TWGCCTCTCSKRG
TTCCCCCTAC---
 A C G T C G A T A C T G A G T C A G T C C G A T A G T C A C G T G T A C A T C G A C T G C T A G A C T G
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TWGCCTCTCSKRG
NNAGTCCCACTCNNNN
 A C G T A C G T A C G T A C G T C G A T A C T G A G T C A G T C C G A T A G T C A C G T G T A C A T C G A C T G C T A G A C T G
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----TWGCCTCTCSKRG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G A G T C A G T C C G A T A G T C A C G T G T A C A T C G A C T G C T A G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TWGCCTCTCSKRG--
ACCACTCTCGGTCAC
 A C G T C G A T A C T G A G T C A G T C C G A T A G T C A C G T G T A C A T C G A C T G C T A G A C T G A C G T A C G T
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---TWGCCTCTCSKRG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T C G A T A C T G A G T C A G T C C G A T A G T C A C G T G T A C A T C G A C T G C T A G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A