Information for 8-CAGAAAGAAAGGC (Motif 9)

A G T C C G T A A C T G C G T A C G T A C T G A A T C G C G T A C G T A C G T A C T A G A C T G A G T C
Reverse Opposite:
C T A G A G T C A G T C A C G T A C G T A C G T A T G C A G C T A C G T A C G T A G T C A C G T A C T G
p-value:1e-10
log p-value:-2.508e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.4 +/- 28.7bp
Average Position of motif in Background61.2 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CAGAAAGAAAGGC
--AAAACAAAGG-
 A G T C C G T A A C T G C G T A C G T A C T G A A T C G C G T A C G T A C G T A C T A G A C T G A G T C
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CAGAAAGAAAGGC
BAGTCATANTGAAAG--
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A C T G A A T C G C G T A C G T A C G T A C T A G A C T G A G T C
A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAGAAAGAAAGGC
-AGAAACGAAAGT
 A G T C C G T A A C T G C G T A C G T A C T G A A T C G C G T A C G T A C G T A C T A G A C T G A G T C
A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CAGAAAGAAAGGC
----AACAAAGG-
 A G T C C G T A A C T G C G T A C G T A C T G A A T C G C G T A C G T A C G T A C T A G A C T G A G T C
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAGAAAGAAAGGC
--GGAACAAAGR-
 A G T C C G T A A C T G C G T A C G T A C T G A A T C G C G T A C G T A C G T A C T A G A C T G A G T C
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGAAAGAAAGGC---
ATAAGAACAAAGGACTA
 A C G T A G T C C G T A A C T G C G T A C G T A C T G A A T C G C G T A C G T A C G T A C T A G A C T G A G T C A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGAAAGAAAGGC---
AGAAGAACAAAGGACTA
 A C G T A G T C C G T A A C T G C G T A C G T A C T G A A T C G C G T A C G T A C G T A C T A G A C T G A G T C A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAAAGAAAGGC
WNAGTCADAVTGAAACTN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A C G T A C T G A A T C G C G T A C G T A C G T A C T A G A C T G A G T C
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAGAAAGAAAGGC
---RAACAATGGN
 A G T C C G T A A C T G C G T A C G T A C T G A A T C G C G T A C G T A C G T A C T A G A C T G A G T C
A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGAAAGAAAGGC
----RACAAWGG-
 A G T C C G T A A C T G C G T A C G T A C T G A A T C G C G T A C G T A C G T A C T A G A C T G A G T C
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T