Information for 9-ACTGCCYTGCTGMTGT (Motif 9)

G C T A A G T C A C G T A C T G G T A C A T G C A G T C A C G T A T C G G A T C A G C T A T C G G T C A A G C T A T C G G A C T
Reverse Opposite:
C T G A A T G C C T G A A C G T T A G C C T G A C T A G A T G C G T C A C T A G A T C G C A T G T G A C G T C A T C A G C A G T
p-value:1e-11
log p-value:-2.622e+01
Information Content per bp:1.677
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif29.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets35.2 +/- 23.8bp
Average Position of motif in Background49.8 +/- 35.8bp
Strand Bias (log2 ratio + to - strand density)-2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ACTGCCYTGCTGMTGT---
-BTGACCTCTNNHTGACCY
 G C T A A G T C A C G T A C T G G T A C A T G C A G T C A C G T A T C G G A T C A G C T A T C G G T C A A G C T A T C G G A C T A C G T A C G T A C G T
A C G T A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:2
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:ACTGCCYTGCTGMTGT-
--TGACCTTTTGACCTC
 G C T A A G T C A C G T A C T G G T A C A T G C A G T C A C G T A T C G G A T C A G C T A T C G G T C A A G C T A T C G G A C T A C G T
A C G T A C G T A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

RARA/MA0729.1/Jaspar

Match Rank:3
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-ACTGCCYTGCTGMTGT-
CATTGACCTTTTGACCTC
 A C G T G C T A A G T C A C G T A C T G G T A C A T G C A G T C A C G T A T C G G A T C A G C T A T C G G T C A A G C T A T C G G A C T A C G T
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C

RARA::RXRA/MA0159.1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:ACTGCCYTGCTGMTGT---
--TGACCTCTCNNTGACCT
 G C T A A G T C A C G T A C T G G T A C A T G C A G T C A C G T A T C G G A T C A G C T A T C G G T C A A G C T A T C G G A C T A C G T A C G T A C G T
A C G T A C G T G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:ACTGCCYTGCTGMTGT-
-----CCCCCTGCTGTG
 G C T A A G T C A C G T A C T G G T A C A T G C A G T C A C G T A T C G G A T C A G C T A T C G G T C A A G C T A T C G G A C T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.50
Offset:5
Orientation:forward strand
Alignment:ACTGCCYTGCTGMTGT
-----CCTGCTGAGH-
 G C T A A G T C A C G T A C T G G T A C A T G C A G T C A C G T A T C G G A T C A G C T A T C G G T C A A G C T A T C G G A C T
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T

Rarb/MA0857.1/Jaspar

Match Rank:7
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:ACTGCCYTGCTGMTGT--
--TGACCTTTTGACCTTT
 G C T A A G T C A C G T A C T G G T A C A T G C A G T C A C G T A T C G G A T C A G C T A T C G G T C A A G C T A T C G G A C T A C G T A C G T
A C G T A C G T G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

PB0050.1_Osr1_1/Jaspar

Match Rank:8
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:ACTGCCYTGCTGMTGT----
----TNNTGCTACTGTNNNN
 G C T A A G T C A C G T A C T G G T A C A T G C A G T C A C G T A T C G G A T C A G C T A T C G G T C A A G C T A T C G G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

Rarg/MA0859.1/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:ACTGCCYTGCTGMTGT-
-TTGACCTTTTGACCTT
 G C T A A G T C A C G T A C T G G T A C A T G C A G T C A C G T A T C G G A T C A G C T A T C G G T C A A G C T A T C G G A C T A C G T
A C G T C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.49
Offset:3
Orientation:forward strand
Alignment:ACTGCCYTGCTGMTGT--
---GGCCYCCTGCTGDGH
 G C T A A G T C A C G T A C T G G T A C A T G C A G T C A C G T A T C G G A T C A G C T A T C G G T C A A G C T A T C G G A C T A C G T A C G T
A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C