Information for 17-ATGCACAGCA (Motif 48)

T C G A A C G T T C A G A T G C G C T A A G T C C T G A A C T G G T A C C T G A
Reverse Opposite:
G A C T C A T G T G A C G A C T C T A G C G A T A T C G A G T C T G C A A G C T
p-value:1e-4
log p-value:-1.080e+01
Information Content per bp:1.716
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif309.7
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets50.6 +/- 26.4bp
Average Position of motif in Background52.7 +/- 48.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:ATGCACAGCA-----
GAGCACAGCAGGACA
 T C G A A C G T T C A G A T G C G C T A A G T C C T G A A C T G G T A C C T G A A C G T A C G T A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:ATGCACAGCA-----
CCACACAGCAGGAGA
 T C G A A C G T T C A G A T G C G C T A A G T C C T G A A C T G G T A C C T G A A C G T A C G T A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:ATGCACAGCA-----
CCACACAGCAGGAGA
 T C G A A C G T T C A G A T G C G C T A A G T C C T G A A C T G G T A C C T G A A C G T A C G T A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.72
Offset:3
Orientation:forward strand
Alignment:ATGCACAGCA-----
---CACAGCAGGGGG
 T C G A A C G T T C A G A T G C G C T A A G T C C T G A A C T G G T A C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:ATGCACAGCA
---CACAGN-
 T C G A A C G T T C A G A T G C G C T A A G T C C T G A A C T G G T A C C T G A
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:ATGCACAGCA--
--DCTCAGCAGG
 T C G A A C G T T C A G A T G C G C T A A G T C C T G A A C T G G T A C C T G A A C G T A C G T
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ATGCACAGCA-----
AATCGCACTGCATTCCG
 A C G T A C G T T C G A A C G T T C A G A T G C G C T A A G T C C T G A A C T G G T A C C T G A A C G T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:ATGCACAGCA-------
--DCHCAGCAGGRGGCC
 T C G A A C G T T C A G A T G C G C T A A G T C C T G A A C T G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATGCACAGCA----
CGAAGCACACAAAATA
 A C G T A C G T T C G A A C G T T C A G A T G C G C T A A G T C C T G A A C T G G T A C C T G A A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------ATGCACAGCA-
NNGTATGTGCACATNNN
 A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C G T T C A G A T G C G C T A A G T C C T G A A C T G G T A C C T G A A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G