Information for 4-AGACATGCTC (Motif 19)

C T G A A T C G G T C A A T G C T C G A A G C T T C A G A G T C C G A T A T G C
Reverse Opposite:
T A C G G C T A T C A G A G T C T C G A A G C T A T C G C A G T T A G C G A C T
p-value:1e-10
log p-value:-2.330e+01
Information Content per bp:1.644
Number of Target Sequences with motif86.0
Percentage of Target Sequences with motif13.15%
Number of Background Sequences with motif2487.5
Percentage of Background Sequences with motif6.22%
Average Position of motif in Targets44.9 +/- 26.3bp
Average Position of motif in Background49.6 +/- 41.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGACATGCTC
RTACGTGC--
 C T G A A T C G G T C A A T G C T C G A A G C T T C A G A G T C C G A T A T G C
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGACATGCTC
CCAGACRSVB--
 A C G T A C G T C T G A A T C G G T C A A T G C T C G A A G C T T C A G A G T C C G A T A T G C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGACATGCTC
AGTCACGC--
 C T G A A T C G G T C A A T G C T C G A A G C T T C A G A G T C C G A T A T G C
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGACATGCTC
GGACGTGC--
 C T G A A T C G G T C A A T G C T C G A A G C T T C A G A G T C C G A T A T G C
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGACATGCTC
BCAGACWA----
 A C G T A C G T C T G A A T C G G T C A A T G C T C G A A G C T T C A G A G T C C G A T A T G C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------AGACATGCTC
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T C G G T C A A T G C T C G A A G C T T C A G A G T C C G A T A T G C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGACATGCTC
CCAGACAG----
 A C G T A C G T C T G A A T C G G T C A A T G C T C G A A G C T T C A G A G T C C G A T A T G C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGACATGCTC-----
-GTCACGCTCNCTGA
 C T G A A T C G G T C A A T G C T C G A A G C T T C A G A G T C C G A T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

CLOCK/MA0819.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGACATGCTC
AACACGTGTT-
 A C G T C T G A A T C G G T C A A T G C T C G A A G C T T C A G A G T C C G A T A T G C
C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGACATGCTC----
AATATACATGTAAAATT
 A C G T A C G T A C G T C T G A A T C G G T C A A T G C T C G A A G C T T C A G A G T C C G A T A T G C A C G T A C G T A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T