Information for 1-CCGCCATTTT (Motif 1)

G A T C A T G C A C T G T G A C A G T C G T C A A C G T A G C T C A G T A C G T
Reverse Opposite:
T G C A G T C A T C G A C G T A A C G T A C T G A C T G G T A C T A C G C T A G
p-value:1e-63
log p-value:-1.453e+02
Information Content per bp:1.692
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif13.00%
Number of Background Sequences with motif411.7
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets53.7 +/- 18.7bp
Average Position of motif in Background49.7 +/- 37.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CCGCCATTTT
GTCCGCCATTA-
 A C G T A C G T G A T C A T G C A C T G T G A C A G T C G T C A A C G T A G C T C A G T A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATTTT-
GCNGCCATCTTG
 A C G T G A T C A T G C A C T G T G A C A G T C G T C A A C G T A G C T C A G T A C G T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATTTT-
GCCGCCATCTTG
 A C G T G A T C A T G C A C T G T G A C A G T C G T C A A C G T A G C T C A G T A C G T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------CCGCCATTTT-
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C A T G C A C T G T G A C A G T C G T C A A C G T A G C T C A G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCGCCATTTT--
--GCCATCTGTT
 G A T C A T G C A C T G T G A C A G T C G T C A A C G T A G C T C A G T A C G T A C G T A C G T
A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

E2F3/MA0469.2/Jaspar

Match Rank:6
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------CCGCCATTTT-
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C A T G C A C T G T G A C A G T C G T C A A C G T A G C T C A G T A C G T A C G T
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCGCCATTTT
-TGCCAA---
 G A T C A T G C A C T G T G A C A G T C G T C A A C G T A G C T C A G T A C G T
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

E2F2/MA0864.1/Jaspar

Match Rank:8
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CCGCCATTTT
AAAATGGCGCCATTTT
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C A T G C A C T G T G A C A G T C G T C A A C G T A G C T C A G T A C G T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCGCCATTTT-
-GGCCATTAAC
 G A T C A T G C A C T G T G A C A G T C G T C A A C G T A G C T C A G T A C G T A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCGCCATTTT
CGTGCCAAG--
 A C G T G A T C A T G C A C T G T G A C A G T C G T C A A C G T A G C T C A G T A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T