Information for 4-GTCTGMSKSTCGC (Motif 15)

A C T G A G C T A G T C A C G T A C T G G T C A A T G C A C G T A T C G A C G T A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G C G T A A T G C G T C A A T C G A C G T A G T C C G T A A C T G C T G A T A G C
p-value:1e-8
log p-value:-1.938e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.8 +/- 17.7bp
Average Position of motif in Background54.4 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GTCTGMSKSTCGC
VBSYGTCTGG-------
 A C G T A C G T A C G T A C G T A C T G A G C T A G T C A C G T A C T G G T C A A T G C A C G T A T C G A C G T A G T C A C T G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GTCTGMSKSTCGC
CTGTCTGG-------
 A C G T A C G T A C T G A G C T A G T C A C G T A C T G G T C A A T G C A C G T A T C G A C G T A G T C A C T G A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCTGMSKSTCGC
TWGTCTGV-------
 A C G T A C G T A C T G A G C T A G T C A C G T A C T G G T C A A T G C A C G T A T C G A C G T A G T C A C T G A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTCTGMSKSTCGC
TGTCTGDCACCT--
 A C G T A C T G A G C T A G T C A C G T A C T G G T C A A T G C A C G T A T C G A C G T A G T C A C T G A G T C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GTCTGMSKSTCGC
NNTNNTGTCTGGNNTNG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C A C G T A C T G G T C A A T G C A C G T A T C G A C G T A G T C A C T G A G T C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTCTGMSKSTCGC
CTGTCTGTCACCT--
 A C G T A C G T A C T G A G C T A G T C A C G T A C T G G T C A A T G C A C G T A T C G A C G T A G T C A C T G A G T C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GTCTGMSKSTCGC
GGTCTGGCAT----
 A C G T A C T G A G C T A G T C A C G T A C T G G T C A A T G C A C G T A T C G A C G T A G T C A C T G A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GTCTGMSKSTCGC
NNNANTGA-------
 A C G T A C G T A C T G A G C T A G T C A C G T A C T G G T C A A T G C A C G T A T C G A C G T A G T C A C T G A G T C
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZBTB33/MA0527.1/Jaspar

Match Rank:9
Score:0.50
Offset:6
Orientation:forward strand
Alignment:GTCTGMSKSTCGC--------
------CTCTCGCGAGATCTG
 A C T G A G C T A G T C A C G T A C T G G T C A A T G C A C G T A T C G A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T T G A C G A C T A G T C C T A G G A T C A C T G T C G A A C T G T C G A A G C T A G T C A G C T A T C G

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GTCTGMSKSTCGC------
----GGNTCTCGCGAGAAC
 A C T G A G C T A G T C A C G T A C T G G T C A A T G C A C G T A T C G A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T C A G T G C A A G C T T G A C A G C T A G T C A C T G G A T C A C T G T C G A A C T G C T G A C T G A A T G C