Information for 2-CGCCAGAGTG (Motif 6)

A G T C A C T G A G T C G A T C C G T A A C T G C G T A C T A G C G A T C A T G
Reverse Opposite:
G A T C C G T A A G T C A C G T A G T C C G A T C A T G A C T G A G T C A C T G
p-value:1e-11
log p-value:-2.680e+01
Information Content per bp:1.816
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif45.3
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets44.7 +/- 32.7bp
Average Position of motif in Background52.3 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZBTB33/MA0527.1/Jaspar

Match Rank:1
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------CGCCAGAGTG
NAGNTCTCGCGAGAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C G A T C C G T A A C T G C G T A C T A G C G A T C A T G
T A G C T C G A T C A G T C G A A G C T T G A C A G C T A G T C C T A G G A T C A C T G C T G A A C T G T C G A T C A G A C G T A C G T

GFX(?)/Promoter/Homer

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CGCCAGAGTG
TCTCGCGAGAAT-
 A C G T A C G T A C G T A G T C A C T G A G T C G A T C C G T A A C T G C G T A C T A G C G A T C A T G
G A C T T G A C A C G T T A G C C A T G A G T C C A T G T C G A A C T G T C G A C T G A A G C T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGCCAGAGTG---
--CTTGAGTGGCT
 A G T C A C T G A G T C G A T C C G T A A C T G C G T A C T A G C G A T C A T G A C G T A C G T A C G T
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CGCCAGAGTG
GGNTCTCGCGAGAAC-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C G A T C C G T A A C T G C G T A C T A G C G A T C A T G
T A C G T C A G T G C A A G C T T G A C A G C T A G T C A C T G G A T C A C T G T C G A A C T G C T G A C T G A A T G C A C G T

Pax6/MA0069.1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CGCCAGAGTG
TTCACGCATGAGTT
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C G A T C C G T A A C T G C G T A C T A G C G A T C A T G
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CGCCAGAGTG------
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C G A T C C G T A A C T G C G T A C T A G C G A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

PAX9/MA0781.1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CGCCAGAGTG--
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C G A T C C G T A A C T G C G T A C T A G C G A T C A T G A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX1/MA0779.1/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CGCCAGAGTG--
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C G A T C C G T A A C T G C G T A C T A G C G A T C A T G A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PB0112.1_E2F2_2/Jaspar

Match Rank:9
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAGAGTG
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C G A T C C G T A A C T G C G T A C T A G C G A T C A T G
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CGCCAGAGTG--
--CTYRAGTGSY
 A G T C A C T G A G T C G A T C C G T A A C T G C G T A C T A G C G A T C A T G A C G T A C G T
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C