Information for 5-CAGCCTCCCTGCTGAG (Motif 12)

A G T C C G T A A C T G A G T C A G T C A C G T A G T C A G T C G A T C A C G T A C T G A G T C A C G T A C T G T C G A C T A G
Reverse Opposite:
A G T C A C G T A G T C C G T A A C T G T A G C C G T A C A T G A C T G A C T G C G T A A C T G A C T G A G T C A C G T A C T G
p-value:1e-10
log p-value:-2.517e+01
Information Content per bp:1.880
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.4 +/- 18.4bp
Average Position of motif in Background72.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:CAGCCTCCCTGCTGAG
----CCCCCTGCTGTG
 A G T C C G T A A C T G A G T C A G T C A C G T A G T C A G T C G A T C A C G T A C T G A G T C A C G T A C T G T C G A C T A G
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CAGCCTCCCTGCTGAG-
--GGCCYCCTGCTGDGH
 A G T C C G T A A C T G A G T C A G T C A C G T A G T C A G T C G A T C A C G T A C T G A G T C A C G T A C T G T C G A C T A G A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.60
Offset:7
Orientation:forward strand
Alignment:CAGCCTCCCTGCTGAG-
-------CCTGCTGAGH
 A G T C C G T A A C T G A G T C A G T C A C G T A G T C A G T C G A T C A C G T A C T G A G T C A C G T A C T G T C G A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CAGCCTCCCTGCTGAG---
----TCNCCTGCTGNGNNN
 A G T C C G T A A C T G A G T C A G T C A C G T A G T C A G T C G A T C A C G T A C T G A G T C A C G T A C T G T C G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAGCCTCCCTGCTGAG
--GACCCCCCGCTGTG
 A G T C C G T A A C T G A G T C A G T C A C G T A G T C A G T C G A T C A C G T A C T G A G T C A C G T A C T G T C G A C T A G
A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGCCTCCCTGCTGAG---
----TNTCCTGCTGTGNNG
 A G T C C G T A A C T G A G T C A G T C A C G T A G T C A G T C G A T C A C G T A C T G A G T C A C G T A C T G T C G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAGCCTCCCTGCTGAG-
--GACCCCCCGCTGCGC
 A G T C C G T A A C T G A G T C A G T C A C G T A G T C A G T C G A T C A C G T A C T G A G T C A C G T A C T G T C G A C T A G A C G T
A C G T A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CAGCCTCCCTGCTGAG
--GCCGCCATCTTG--
 A G T C C G T A A C T G A G T C A G T C A C G T A G T C A G T C G A T C A C G T A C T G A G T C A C G T A C T G T C G A C T A G
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAGCCTCCCTGCTGAG-
--GACCCCCCGCTGTGC
 A G T C C G T A A C T G A G T C A G T C A C G T A G T C A G T C G A T C A C G T A C T G A G T C A C G T A C T G T C G A C T A G A C G T
A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CAGCCTCCCTGCTGAG---
----NNTCCTGCTGTGNNN
 A G T C C G T A A C T G A G T C A G T C A C G T A G T C A G T C G A T C A C G T A C T G A G T C A C G T A C T G T C G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C