Information for 6-TAATTAGCAC (Motif 9)

A G C T T G C A C G T A C G A T A G C T C T G A A C T G A T G C G T C A G A T C
Reverse Opposite:
C T A G C A G T A T C G T G A C G A C T T C G A G C T A G C A T A C G T T C G A
p-value:1e-14
log p-value:-3.227e+01
Information Content per bp:1.672
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.36%
Number of Background Sequences with motif642.9
Percentage of Background Sequences with motif1.35%
Average Position of motif in Targets42.1 +/- 23.9bp
Average Position of motif in Background51.8 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:TAATTAGCAC
TAATTAGN--
 A G C T T G C A C G T A C G A T A G C T C T G A A C T G A T G C G T C A G A T C
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T

PH0081.1_Pdx1/Jaspar

Match Rank:2
Score:0.84
Offset:-4
Orientation:forward strand
Alignment:----TAATTAGCAC--
AAGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A G C T T G C A C G T A C G A T A G C T C T G A A C T G A T G C G T C A G A T C A C G T A C G T
T G C A T G C A C T A G A T C G G A C T T G C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T T A G C C G T A C A G T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:3
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAGCAC--
GTTAATTANCTCNN
 A C G T A C G T A G C T T G C A C G T A C G A T A G C T C T G A A C T G A T G C G T C A G A T C A C G T A C G T
T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A

LHX2/MA0700.1/Jaspar

Match Rank:4
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAGCAC
NNTAATTAGN--
 A C G T A C G T A G C T T G C A C G T A C G A T A G C T C T G A A C T G A T G C G T C A G A T C
T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T A C G T A C G T

Hoxb5/MA0904.1/Jaspar

Match Rank:5
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----TAATTAGCAC--
ACGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A G C T T G C A C G T A C G A T A G C T C T G A A C T G A T G C G T C A G A T C A C G T A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0060.1_Hoxb5/Jaspar

Match Rank:6
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----TAATTAGCAC--
ACGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A G C T T G C A C G T A C G A T A G C T C T G A A C T G A T G C G T C A G A T C A C G T A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

EMX2/MA0886.1/Jaspar

Match Rank:7
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--TAATTAGCAC
GCTAATTAGC--
 A C G T A C G T A G C T T G C A C G T A C G A T A G C T C T G A A C T G A T G C G T C A G A T C
T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:8
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-TAATTAGCAC
TTAATTAG---
 A C G T A G C T T G C A C G T A C G A T A G C T C T G A A C T G A T G C G T C A G A T C
C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T A C G T

LHX6/MA0658.1/Jaspar

Match Rank:9
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--TAATTAGCAC
ACTAATTAGC--
 A C G T A C G T A G C T T G C A C G T A C G A T A G C T C T G A A C T G A T G C G T C A G A T C
T C G A A G T C A G C T T C G A G T C A A G C T A G C T C T G A T C A G A G T C A C G T A C G T

PH0045.1_Hoxa1/Jaspar

Match Rank:10
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAGCAC--
ACGGTAATTAGCTCAG
 A C G T A C G T A C G T A C G T A G C T T G C A C G T A C G A T A G C T C T G A A C T G A T G C G T C A G A T C A C G T A C G T
T C G A T G A C C T A G A C T G A G C T G T C A C G T A A C G T A C G T C T G A T A C G A G T C G A C T G A T C C T G A C T A G