Information for 5-CGTCAGGGATTAA (Motif 6)

A T G C T A C G C G A T A G T C C T G A C T A G A C T G A C T G C G T A G A C T A G C T C T G A C G T A
Reverse Opposite:
A C G T A G C T C T G A C G T A A C G T A G T C A G T C A G T C A G C T A C T G C G T A A T G C A T C G
p-value:1e-16
log p-value:-3.724e+01
Information Content per bp:1.810
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.5 +/- 18.4bp
Average Position of motif in Background60.0 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0130.1_Otx2/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CGTCAGGGATTAA-----
-TGTAGGGATTAATTGTC
 A T G C T A C G C G A T A G T C C T G A C T A G A C T G A C T G C G T A G A C T A G C T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0125.1_Obox5_2/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CGTCAGGGATTAA-----
-NANAGGGATTAATTATN
 A T G C T A C G C G A T A G T C C T G A C T A G A C T G A C T G C G T A G A C T A G C T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CGTCAGGGATTAA----
TTAGAGGGATTAACAAT
 A T G C T A C G C G A T A G T C C T G A C T A G A C T G A C T G C G T A G A C T A G C T C T G A C G T A A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PH0124.1_Obox5_1/Jaspar

Match Rank:4
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CGTCAGGGATTAA-----
-TAGAGGGATTAAATTTC
 A T G C T A C G C G A T A G T C C T G A C T A G A C T G A C T G C G T A G A C T A G C T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PH0138.1_Pitx2/Jaspar

Match Rank:5
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CGTCAGGGATTAA-----
-TGAAGGGATTAATCATC
 A T G C T A C G C G A T A G T C C T G A C T A G A C T G A C T G C G T A G A C T A G C T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.76
Offset:4
Orientation:reverse strand
Alignment:CGTCAGGGATTAA-
----VRGGATTARN
 A T G C T A C G C G A T A G T C C T G A C T A G A C T G A C T G C G T A G A C T A G C T C T G A C G T A A C G T
A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CGTCAGGGATTAA-----
-AGAGGGGATTAATTTAT
 A T G C T A C G C G A T A G T C C T G A C T A G A C T G A C T G C G T A G A C T A G C T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0035.1_Gsc/Jaspar

Match Rank:8
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CGTCAGGGATTAA-----
-NNAAGGGATTAACGANT
 A T G C T A C G C G A T A G T C C T G A C T A G A C T G A C T G C G T A G A C T A G C T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.75
Offset:5
Orientation:reverse strand
Alignment:CGTCAGGGATTAA
-----GGGATTAA
 A T G C T A C G C G A T A G T C C T G A C T A G A C T G A C T G C G T A G A C T A G C T C T G A C G T A
A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.75
Offset:5
Orientation:reverse strand
Alignment:CGTCAGGGATTAA-
-----GGGATTANN
 A T G C T A C G C G A T A G T C C T G A C T A G A C T G A C T G C G T A G A C T A G C T C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G