Information for 1-CTCTTTGAAATGCTAA (Motif 3)

T A G C A G C T A G T C C G A T G A C T C A G T A T C G C G T A G T C A C G T A C G A T A C T G A G T C C G A T T C G A G T C A
Reverse Opposite:
A C G T A G C T C G T A T C A G G T A C G C T A C G A T A C G T C G A T A T G C G T C A C G T A C G T A T C A G T C G A A T C G
p-value:1e-23
log p-value:-5.511e+01
Information Content per bp:1.656
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.4 +/- 21.5bp
Average Position of motif in Background65.9 +/- 10.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:CTCTTTGAAATGCTAA-
--CTTTGTTATGCAAAT
 T A G C A G C T A G T C C G A T G A C T C A G T A T C G C G T A G T C A C G T A C G A T A C T G A G T C C G A T T C G A G T C A A C G T
A C G T A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:CTCTTTGAAATGCTAA-
--CATTGTTATGCAAAT
 T A G C A G C T A G T C C G A T G A C T C A G T A T C G C G T A G T C A C G T A C G A T A C T G A G T C C G A T T C G A G T C A A C G T
A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTCTTTGAAATGCTAA
-CCTTTGATGT-----
 T A G C A G C T A G T C C G A T G A C T C A G T A T C G C G T A G T C A C G T A C G A T A C T G A G T C C G A T T C G A G T C A
A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTCTTTGAAATGCTAA
---TTTGAAACCG---
 T A G C A G C T A G T C C G A T G A C T C A G T A T C G C G T A G T C A C G T A C G A T A C T G A G T C C G A T T C G A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.58
Offset:8
Orientation:forward strand
Alignment:CTCTTTGAAATGCTAA----
--------TATGCWAATBAV
 T A G C A G C T A G T C C G A T G A C T C A G T A T C G C G T A G T C A C G T A C G A T A C T G A G T C C G A T T C G A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTTGAAATGCTAA
TNCCTTTGATCTTN---
 A C G T T A G C A G C T A G T C C G A T G A C T C A G T A T C G C G T A G T C A C G T A C G A T A C T G A G T C C G A T T C G A G T C A
C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTCTTTGAAATGCTAA
-CCTTTGAWGT-----
 T A G C A G C T A G T C C G A T G A C T C A G T A T C G C G T A G T C A C G T A C G A T A C T G A G T C C G A T T C G A G T C A
A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CTCTTTGAAATGCTAA----
--------WATGCAAATGAG
 T A G C A G C T A G T C C G A T G A C T C A G T A T C G C G T A G T C A C G T A C G A T A C T G A G T C C G A T T C G A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTTGAAATGCTAA
TNCCTTTGATGT-----
 A C G T T A G C A G C T A G T C C G A T G A C T C A G T A T C G C G T A G T C A C G T A C G A T A C T G A G T C C G A T T C G A G T C A
C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:10
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CTCTTTGAAATGCTAA---
-------TTATGCAAATTA
 T A G C A G C T A G T C C G A T G A C T C A G T A T C G C G T A G T C A C G T A C G A T A C T G A G T C C G A T T C G A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A