Information for 10-CTGCATAAACCCT (Motif 12)

A G T C A C G T A T C G A G T C G T C A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G A T
Reverse Opposite:
C G T A A C T G A C T G A C T G G A C T A C G T C G A T C G T A A C G T A C T G A T G C C G T A A C T G
p-value:1e-13
log p-value:-3.070e+01
Information Content per bp:1.880
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 23.3bp
Average Position of motif in Background34.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.65
Offset:5
Orientation:forward strand
Alignment:CTGCATAAACCCT
-----TAATCCCN
 A G T C A C G T A T C G A G T C G T C A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G A T
A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTGCATAAACCCT
---CTTAATCCC-
 A G T C A C G T A T C G A G T C G T C A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G A T
A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTGCATAAACCCT
---NYTAATCCYB
 A G T C A C G T A T C G A G T C G T C A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G A T
A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTGCATAAACCCT
----TTAATCCC-
 A G T C A C G T A T C G A G T C G T C A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G A T
A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T

GSC/MA0648.1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTGCATAAACCCT
---GCTAATCCCC
 A G T C A C G T A T C G A G T C G T C A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G A T
A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGCATAAACCCT
ATGMATATDC---
 A G T C A C G T A T C G A G T C G T C A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G A T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTGCATAAACCCT
---CCTAATCCGC
 A G T C A C G T A T C G A G T C G T C A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G A T
A C G T A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

RHOXF1/MA0719.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTGCATAAACCCT
----ATAATCCC-
 A G T C A C G T A T C G A G T C G T C A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G A T
A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTGCATAAACCCT
---GCTAATCC--
 A G T C A C G T A T C G A G T C G T C A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G A T
A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTGCATAAACCCT
----YTAATCCY-
 A G T C A C G T A T C G A G T C G T C A A C G T C G T A C G T A C G T A A G T C A G T C A G T C C G A T
A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T