Information for 13-GCAATTTGCA (Motif 29)

C A T G T G A C G T C A T G C A A G C T A C G T G A C T A T C G G T A C G T C A
Reverse Opposite:
A C G T A C T G T A G C C T G A T G C A T C G A A C G T C A G T A C T G G T A C
p-value:1e-7
log p-value:-1.732e+01
Information Content per bp:1.660
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.94%
Number of Background Sequences with motif572.6
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets50.6 +/- 25.1bp
Average Position of motif in Background51.9 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:GCAATTTGCA---
---ATTTGCATAA
 C A T G T G A C G T C A T G C A A G C T A C G T G A C T A T C G G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GCAATTTGCA---
---ATTTGCATAT
 C A T G T G A C G T C A T G C A A G C T A C G T G A C T A T C G G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCAATTTGCA---
TTCATTTGCATAT
 C A T G T G A C G T C A T G C A A G C T A C G T G A C T A T C G G T A C G T C A A C G T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTTGCA-----
TNTAATTTGCATACNA
 A C G T C A T G T G A C G T C A T G C A A G C T A C G T G A C T A T C G G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTTGCA-----
TNTAATTTGCATACNA
 A C G T C A T G T G A C G T C A T G C A A G C T A C G T G A C T A T C G G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

POU2F1/MA0785.1/Jaspar

Match Rank:6
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GCAATTTGCA----
--AATTTGCATANT
 C A T G T G A C G T C A T G C A A G C T A C G T G A C T A T C G G T A C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTTGCA-----
TNTAATTTGCATANNN
 A C G T C A T G T G A C G T C A T G C A A G C T A C G T G A C T A T C G G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GCAATTTGCA--
---ATTTGCATA
 C A T G T G A C G T C A T G C A A G C T A C G T G A C T A T C G G T A C G T C A A C G T A C G T
A C G T A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

POU3F2/MA0787.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCAATTTGCA---
-TAATTTGCATAA
 C A T G T G A C G T C A T G C A A G C T A C G T G A C T A T C G G T A C G T C A A C G T A C G T A C G T
A C G T C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:10
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GCAATTTGCA--
---ATTTGCATA
 C A T G T G A C G T C A T G C A A G C T A C G T G A C T A T C G G T A C G T C A A C G T A C G T
A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A