Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-113 | -2.613e+02 | 0.0000 | 120.0 | 14.44% | 332.5 | 0.70% | motif file (matrix) |
svg |
2 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-93 | -2.163e+02 | 0.0000 | 139.0 | 16.73% | 750.1 | 1.57% | motif file (matrix) |
svg |
3 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-58 | -1.341e+02 | 0.0000 | 326.0 | 39.23% | 7573.9 | 15.86% | motif file (matrix) |
svg |
4 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-52 | -1.207e+02 | 0.0000 | 363.0 | 43.68% | 9619.1 | 20.15% | motif file (matrix) |
svg |
5 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-49 | -1.136e+02 | 0.0000 | 271.0 | 32.61% | 6067.8 | 12.71% | motif file (matrix) |
svg |
6 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-47 | -1.097e+02 | 0.0000 | 244.0 | 29.36% | 5173.3 | 10.84% | motif file (matrix) |
svg |
7 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-42 | -9.865e+01 | 0.0000 | 258.0 | 31.05% | 6060.2 | 12.69% | motif file (matrix) |
svg |
8 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-36 | -8.339e+01 | 0.0000 | 238.0 | 28.64% | 5818.4 | 12.19% | motif file (matrix) |
svg |
9 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-22 | -5.293e+01 | 0.0000 | 111.0 | 13.36% | 2165.7 | 4.54% | motif file (matrix) |
svg |
10 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-19 | -4.424e+01 | 0.0000 | 151.0 | 18.17% | 3938.9 | 8.25% | motif file (matrix) |
svg |
11 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-18 | -4.238e+01 | 0.0000 | 109.0 | 13.12% | 2423.0 | 5.08% | motif file (matrix) |
svg |
12 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-13 | -3.220e+01 | 0.0000 | 20.0 | 2.41% | 105.7 | 0.22% | motif file (matrix) |
svg |
13 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-13 | -3.149e+01 | 0.0000 | 141.0 | 16.97% | 4147.7 | 8.69% | motif file (matrix) |
svg |
14 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-13 | -3.124e+01 | 0.0000 | 122.0 | 14.68% | 3375.3 | 7.07% | motif file (matrix) |
svg |
15 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-13 | -3.119e+01 | 0.0000 | 135.0 | 16.25% | 3913.0 | 8.20% | motif file (matrix) |
svg |
16 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-12 | -2.826e+01 | 0.0000 | 98.0 | 11.79% | 2560.7 | 5.36% | motif file (matrix) |
svg |
17 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-10 | -2.512e+01 | 0.0000 | 143.0 | 17.21% | 4613.9 | 9.66% | motif file (matrix) |
svg |
18 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-10 | -2.352e+01 | 0.0000 | 130.0 | 15.64% | 4145.8 | 8.68% | motif file (matrix) |
svg |
19 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-9 | -2.295e+01 | 0.0000 | 114.0 | 13.72% | 3489.7 | 7.31% | motif file (matrix) |
svg |
20 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-9 | -2.245e+01 | 0.0000 | 10.0 | 1.20% | 29.0 | 0.06% | motif file (matrix) |
svg |
21 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-9 | -2.234e+01 | 0.0000 | 218.0 | 26.23% | 8346.0 | 17.48% | motif file (matrix) |
svg |
22 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-9 | -2.099e+01 | 0.0000 | 68.0 | 8.18% | 1725.6 | 3.61% | motif file (matrix) |
svg |
23 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-8 | -1.978e+01 | 0.0000 | 353.0 | 42.48% | 15618.8 | 32.72% | motif file (matrix) |
svg |
24 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-7 | -1.790e+01 | 0.0000 | 24.0 | 2.89% | 341.2 | 0.71% | motif file (matrix) |
svg |
25 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-7 | -1.789e+01 | 0.0000 | 79.0 | 9.51% | 2313.8 | 4.85% | motif file (matrix) |
svg |
26 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-7 | -1.653e+01 | 0.0000 | 42.0 | 5.05% | 945.1 | 1.98% | motif file (matrix) |
svg |
27 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.566e+01 | 0.0000 | 48.0 | 5.78% | 1197.3 | 2.51% | motif file (matrix) |
svg |
28 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-6 | -1.513e+01 | 0.0000 | 68.0 | 8.18% | 2014.1 | 4.22% | motif file (matrix) |
svg |
29 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-6 | -1.468e+01 | 0.0000 | 80.0 | 9.63% | 2549.5 | 5.34% | motif file (matrix) |
svg |
30 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-6 | -1.385e+01 | 0.0000 | 38.0 | 4.57% | 901.8 | 1.89% | motif file (matrix) |
svg |
31 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-5 | -1.342e+01 | 0.0000 | 90.0 | 10.83% | 3079.9 | 6.45% | motif file (matrix) |
svg |
32 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-5 | -1.306e+01 | 0.0000 | 36.0 | 4.33% | 859.5 | 1.80% | motif file (matrix) |
svg |
33 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-5 | -1.216e+01 | 0.0001 | 75.0 | 9.03% | 2505.6 | 5.25% | motif file (matrix) |
svg |
34 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-5 | -1.208e+01 | 0.0001 | 77.0 | 9.27% | 2600.9 | 5.45% | motif file (matrix) |
svg |
35 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-5 | -1.176e+01 | 0.0001 | 67.0 | 8.06% | 2183.4 | 4.57% | motif file (matrix) |
svg |
36 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.166e+01 | 0.0001 | 22.0 | 2.65% | 423.7 | 0.89% | motif file (matrix) |
svg |
37 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-5 | -1.161e+01 | 0.0001 | 47.0 | 5.66% | 1350.2 | 2.83% | motif file (matrix) |
svg |
38 |
| E-box(bHLH)/Promoter/Homer | 1e-4 | -1.064e+01 | 0.0002 | 14.0 | 1.68% | 207.1 | 0.43% | motif file (matrix) |
svg |
39 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-4 | -1.022e+01 | 0.0003 | 42.0 | 5.05% | 1223.5 | 2.56% | motif file (matrix) |
svg |
40 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-4 | -9.991e+00 | 0.0004 | 15.0 | 1.81% | 249.8 | 0.52% | motif file (matrix) |
svg |
41 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-4 | -9.303e+00 | 0.0008 | 37.0 | 4.45% | 1070.4 | 2.24% | motif file (matrix) |
svg |
42 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-3 | -9.136e+00 | 0.0009 | 27.0 | 3.25% | 686.2 | 1.44% | motif file (matrix) |
svg |
43 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.768e+00 | 0.0036 | 36.0 | 4.33% | 1118.4 | 2.34% | motif file (matrix) |
svg |
44 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-3 | -7.755e+00 | 0.0036 | 71.0 | 8.54% | 2695.4 | 5.65% | motif file (matrix) |
svg |
45 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.714e+00 | 0.0098 | 13.0 | 1.56% | 272.2 | 0.57% | motif file (matrix) |
svg |
46 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.695e+00 | 0.0098 | 44.0 | 5.29% | 1544.8 | 3.24% | motif file (matrix) |
svg |
47 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -6.687e+00 | 0.0098 | 9.0 | 1.08% | 146.2 | 0.31% | motif file (matrix) |
svg |
48 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-2 | -6.568e+00 | 0.0107 | 26.0 | 3.13% | 773.6 | 1.62% | motif file (matrix) |
svg |
49 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-2 | -6.373e+00 | 0.0127 | 24.0 | 2.89% | 702.6 | 1.47% | motif file (matrix) |
svg |
50 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-2 | -6.213e+00 | 0.0146 | 46.0 | 5.54% | 1676.1 | 3.51% | motif file (matrix) |
svg |
51 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-2 | -6.125e+00 | 0.0156 | 84.0 | 10.11% | 3510.4 | 7.35% | motif file (matrix) |
svg |
52 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -6.082e+00 | 0.0160 | 33.0 | 3.97% | 1102.6 | 2.31% | motif file (matrix) |
svg |
53 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-2 | -5.965e+00 | 0.0176 | 31.0 | 3.73% | 1023.2 | 2.14% | motif file (matrix) |
svg |
54 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.884e+00 | 0.0188 | 11.0 | 1.32% | 230.7 | 0.48% | motif file (matrix) |
svg |
55 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -5.797e+00 | 0.0201 | 33.0 | 3.97% | 1123.3 | 2.35% | motif file (matrix) |
svg |
56 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-2 | -5.721e+00 | 0.0213 | 77.0 | 9.27% | 3217.0 | 6.74% | motif file (matrix) |
svg |
57 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.699e+00 | 0.0214 | 38.0 | 4.57% | 1355.2 | 2.84% | motif file (matrix) |
svg |
58 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.533e+00 | 0.0248 | 81.0 | 9.75% | 3440.9 | 7.21% | motif file (matrix) |
svg |
59 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.513e+00 | 0.0249 | 20.0 | 2.41% | 586.6 | 1.23% | motif file (matrix) |
svg |
60 |
| Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.351e+00 | 0.0288 | 132.0 | 15.88% | 6083.7 | 12.74% | motif file (matrix) |
svg |
61 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-2 | -5.339e+00 | 0.0288 | 21.0 | 2.53% | 637.6 | 1.34% | motif file (matrix) |
svg |
62 |
| RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer | 1e-2 | -5.274e+00 | 0.0301 | 10.0 | 1.20% | 215.0 | 0.45% | motif file (matrix) |
svg |
63 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.199e+00 | 0.0319 | 26.0 | 3.13% | 859.6 | 1.80% | motif file (matrix) |
svg |
64 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.131e+00 | 0.0336 | 11.0 | 1.32% | 255.3 | 0.53% | motif file (matrix) |
svg |
65 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -5.062e+00 | 0.0355 | 137.0 | 16.49% | 6400.7 | 13.41% | motif file (matrix) |
svg |
66 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-2 | -5.056e+00 | 0.0355 | 14.0 | 1.68% | 370.4 | 0.78% | motif file (matrix) |
svg |
67 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-2 | -5.005e+00 | 0.0364 | 18.0 | 2.17% | 532.5 | 1.12% | motif file (matrix) |
svg |
68 |
| PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer | 1e-2 | -4.868e+00 | 0.0412 | 16.0 | 1.93% | 458.9 | 0.96% | motif file (matrix) |
svg |
69 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-2 | -4.864e+00 | 0.0412 | 25.0 | 3.01% | 839.5 | 1.76% | motif file (matrix) |
svg |
70 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.755e+00 | 0.0448 | 49.0 | 5.90% | 1964.6 | 4.12% | motif file (matrix) |
svg |
71 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -4.717e+00 | 0.0458 | 48.0 | 5.78% | 1920.3 | 4.02% | motif file (matrix) |
svg |