Information for 4-TGCATTTGAATGG (Motif 5)

C A G T A C T G G T A C G T C A C G A T C A G T C G A T A T C G C G T A T C G A C G A T T A C G T C A G
Reverse Opposite:
A G T C A T G C G C T A A C G T G A C T A T G C G C T A G T C A C G T A A C G T A C T G T A G C G T C A
p-value:1e-12
log p-value:-2.926e+01
Information Content per bp:1.660
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.4 +/- 15.3bp
Average Position of motif in Background64.9 +/- 11.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TGCATTTGAATGG
ATTTGCATAACAAAG-
 A C G T A C G T A C G T C A G T A C T G G T A C G T C A C G A T C A G T C G A T A T C G C G T A T C G A C G A T T A C G T C A G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TGCATTTGAATGG
ATTTGCATAACAATG-
 A C G T A C G T A C G T C A G T A C T G G T A C G T C A C G A T C A G T C G A T A T C G C G T A T C G A C G A T T A C G T C A G
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGCATTTGAATGG
AYATGYATATGCATR-
 A C G T A C G T A C G T C A G T A C T G G T A C G T C A C G A T C A G T C G A T A T C G C G T A T C G A C G A T T A C G T C A G
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G A C G T

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGCATTTGAATGG
---ATTTGAATT-
 C A G T A C T G G T A C G T C A C G A T C A G T C G A T A T C G C G T A T C G A C G A T T A C G T C A G
A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGCATTTGAATGG
---ACATCAAAGG
 C A G T A C T G G T A C G T C A C G A T C A G T C G A T A T C G C G T A T C G A C G A T T A C G T C A G
A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------TGCATTTGAATGG
TTCATTTGCATAT------
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G G T A C G T C A C G A T C A G T C G A T A T C G C G T A T C G A C G A T T A C G T C A G
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCATTTGAATGG-
ATGAATATTCATGAG
 A C G T C A G T A C T G G T A C G T C A C G A T C A G T C G A T A T C G C G T A T C G A C G A T T A C G T C A G A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGCATTTGAATGG
ATTTGCATAT------
 A C G T A C G T A C G T C A G T A C T G G T A C G T C A C G A T C A G T C G A T A T C G C G T A T C G A C G A T T A C G T C A G
G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T A C G T A C G T A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TGCATTTGAATGG
---ACWTCAAAGG
 C A G T A C T G G T A C G T C A C G A T C A G T C G A T A T C G C G T A T C G A C G A T T A C G T C A G
A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGCATTTGAATGG
CTCATTTGCATW-
 C A G T A C T G G T A C G T C A C G A T C A G T C G A T A T C G C G T A T C G A C G A T T A C G T C A G
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T