Information for 3-TGCTGCCCTCTAG (Motif 4)

C A G T A C T G T A G C G A C T A C T G A T G C A G T C A G T C A C G T A T G C A G C T T C G A T A C G
Reverse Opposite:
A T G C A G C T C T G A A T C G T C G A A C T G C T A G T A C G G T A C C G T A A T C G A G T C G C T A
p-value:1e-15
log p-value:-3.569e+01
Information Content per bp:1.759
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif75.2
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets57.1 +/- 22.3bp
Average Position of motif in Background51.5 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGCTGCCCTCTAG------
ANAGTGCCACCTGGTGGCCA
 A C G T C A G T A C T G T A G C G A C T A C T G A T G C A G T C A G T C A C G T A T G C A G C T T C G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGCTGCCCTCTAG----
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T C A G T A C T G T A G C G A C T A C T G A T G C A G T C A G T C A C G T A T G C A G C T T C G A T A C G A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCTGCCCTCTAG------
TAGCGCCCCCTGGTGGCCA
 C A G T A C T G T A G C G A C T A C T G A T G C A G T C A G T C A C G T A T G C A G C T T C G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TGCTGCCCTCTAG
--CTGACCTTTG-
 C A G T A C T G T A G C G A C T A C T G A T G C A G T C A G T C A C G T A T G C A G C T T C G A T A C G
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

YY1(Zf)/Promoter/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGCTGCCCTCTAG
-GCCGCCATCTTG
 C A G T A C T G T A G C G A C T A C T G A T G C A G T C A G T C A C G T A T G C A G C T T C G A T A C G
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGCTGCCCTCTAG
---TGACCYCT--
 C A G T A C T G T A G C G A C T A C T G A T G C A G T C A G T C A C G T A T G C A G C T T C G A T A C G
A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGCTGCCCTCTAG
---TGACCTYA--
 C A G T A C T G T A G C G A C T A C T G A T G C A G T C A G T C A C G T A T G C A G C T T C G A T A C G
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGCTGCCCTCTAG
--CTGCCCGCA--
 C A G T A C T G T A G C G A C T A C T G A T G C A G T C A G T C A C G T A T G C A G C T T C G A T A C G
A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TGCTGCCCTCTAG
AATTTGCTGAC------
 A C G T A C G T A C G T A C G T C A G T A C T G T A G C G A C T A C T G A T G C A G T C A G T C A C G T A T G C A G C T T C G A T A C G
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGCTGCCCTCTAG
NGCTN--------
 C A G T A C T G T A G C G A C T A C T G A T G C A G T C A G T C A C G T A T G C A G C T T C G A T A C G
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T