Information for 1-SAGAACAAWGGSV (Motif 1)

T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A
Reverse Opposite:
A C G T A T G C A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T G A T C A G C T A T C G
p-value:1e-261
log p-value:-6.013e+02
Information Content per bp:1.682
Number of Target Sequences with motif439.0
Percentage of Target Sequences with motif55.22%
Number of Background Sequences with motif3693.1
Percentage of Background Sequences with motif7.88%
Average Position of motif in Targets49.9 +/- 23.5bp
Average Position of motif in Background49.8 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.95
Offset:2
Orientation:reverse strand
Alignment:SAGAACAAWGGSV
--GAACAATGGN-
 T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.94
Offset:3
Orientation:reverse strand
Alignment:SAGAACAAWGGSV
---AACAAAGG--
 T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:SAGAACAAWGGSV
-AAAACAATGG--
 T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:SAGAACAAWGGSV
-AAAACAAAGG--
 T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.93
Offset:3
Orientation:reverse strand
Alignment:SAGAACAAWGGSV
---RACAAWGG--
 T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:SAGAACAAWGGSV
-VRRACAAWGG--
 T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:SAGAACAAWGGSV
-GGAACAAAGR--
 T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.91
Offset:2
Orientation:forward strand
Alignment:SAGAACAAWGGSV
--RAACAATGGN-
 T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:SAGAACAAWGGSV
-VRAACAATGG--
 T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:SAGAACAAWGGSV
-RNAACAATGG--
 T A G C T C G A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T A C G T G C A
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T