Information for 5-TCTGCAGGCA (Motif 7)

A G C T A T G C C A G T T C A G A T G C C G T A C T A G T C A G T A G C C T G A
Reverse Opposite:
G A C T A T C G A G T C G A T C G C A T T A C G A G T C G T C A T A C G T C G A
p-value:1e-12
log p-value:-2.987e+01
Information Content per bp:1.675
Number of Target Sequences with motif141.0
Percentage of Target Sequences with motif16.51%
Number of Background Sequences with motif3963.5
Percentage of Background Sequences with motif8.63%
Average Position of motif in Targets48.9 +/- 25.1bp
Average Position of motif in Background48.9 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TCTGCAGGCA
DCTCAGCAGG--
 A C G T A C G T A G C T A T G C C A G T T C A G A T G C C G T A C T A G T C A G T A G C C T G A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCTGCAGGCA-
CACAGCAGGGGG
 A C G T A G C T A T G C C A G T T C A G A T G C C G T A C T A G T C A G T A G C C T G A A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TCTGCAGGCA---
DCHCAGCAGGRGGCC
 A C G T A C G T A G C T A T G C C A G T T C A G A T G C C G T A C T A G T C A G T A G C C T G A A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TCTGCAGGCA-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A G C T A T G C C A G T T C A G A T G C C G T A C T A G T C A G T A G C C T G A A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TCTGCAGGCA-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A G C T A T G C C A G T T C A G A T G C C G T A C T A G T C A G T A G C C T G A A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TCTGCAGGCA-
--TNNGGGCAG
 A G C T A T G C C A G T T C A G A T G C C G T A C T A G T C A G T A G C C T G A A C G T
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TCTGCAGGCA-
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T A G C T A T G C C A G T T C A G A T G C C G T A C T A G T C A G T A G C C T G A A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

GCM2/MA0767.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCTGCAGGCA
TATGCGGGTA
 A G C T A T G C C A G T T C A G A T G C C G T A C T A G T C A G T A G C C T G A
A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TCTGCAGGCA-
---BCAGACWA
 A G C T A T G C C A G T T C A G A T G C C G T A C T A G T C A G T A G C C T G A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.58
Offset:-10
Orientation:forward strand
Alignment:----------TCTGCAGGCA
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T G C C A G T T C A G A T G C C G T A C T A G T C A G T A G C C T G A
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T