Information for 3-ADTCCAGACA (Motif 3)

T C G A C T G A G C A T T A G C G T A C C G T A T A C G C T G A A G T C C T G A
Reverse Opposite:
G A C T A C T G G A C T A T G C G C A T A C T G A T C G C G T A G A C T A G C T
p-value:1e-15
log p-value:-3.612e+01
Information Content per bp:1.648
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif9.25%
Number of Background Sequences with motif1481.7
Percentage of Background Sequences with motif3.22%
Average Position of motif in Targets49.3 +/- 23.6bp
Average Position of motif in Background51.3 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--ADTCCAGACA-----
CAAATCCAGACATCACA
 A C G T A C G T T C G A C T G A G C A T T A G C G T A C C G T A T A C G C T G A A G T C C T G A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.87
Offset:3
Orientation:reverse strand
Alignment:ADTCCAGACA-
---CCAGACAG
 T C G A C T G A G C A T T A G C G T A C C G T A T A C G C T G A A G T C C T G A A C G T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.86
Offset:3
Orientation:reverse strand
Alignment:ADTCCAGACA---
---CCAGACRSVB
 T C G A C T G A G C A T T A G C G T A C C G T A T A C G C T G A A G T C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:ADTCCAGACA
ATGCCAGACN
 T C G A C T G A G C A T T A G C G T A C C G T A T A C G C T G A A G T C C T G A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:ADTCCAGACA-
---BCAGACWA
 T C G A C T G A G C A T T A G C G T A C C G T A T A C G C T G A A G T C C T G A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Mafb/MA0117.2/Jaspar

Match Rank:6
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ADTCCAGACA
AAAATGCTGACT
 A C G T A C G T T C G A C T G A G C A T T A G C G T A C C G T A T A C G C T G A A G T C C T G A
C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T

PB0041.1_Mafb_1/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ADTCCAGACA----
AAATTTGCTGACTTAGA
 A C G T A C G T A C G T T C G A C T G A G C A T T A G C G T A C C G T A T A C G C T G A A G T C C T G A A C G T A C G T A C G T A C G T
G C T A C T G A C G T A G C A T C A G T G C A T C A T G G T A C G C A T C A T G C G T A A G T C C G A T G C A T C T G A C T A G G T A C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.69
Offset:2
Orientation:forward strand
Alignment:ADTCCAGACA--
--TGCTGACTCA
 T C G A C T G A G C A T T A G C G T A C C G T A T A C G C T G A A G T C C T G A A C G T A C G T
A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.68
Offset:4
Orientation:forward strand
Alignment:ADTCCAGACA-
----TTGACAG
 T C G A C T G A G C A T T A G C G T A C C G T A T A C G C T G A A G T C C T G A A C G T
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ADTCCAGACA
AATTTGCTGAC-
 A C G T A C G T T C G A C T G A G C A T T A G C G T A C C G T A T A C G C T G A A G T C C T G A
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T