Information for 3-CCATTGAAAT (Motif 9)

T G A C A G T C T C G A A C G T G A C T A C T G C T G A G T C A T C G A G C A T
Reverse Opposite:
C G T A A G C T A C G T G A C T T G A C C T G A T G C A A G C T T C A G A C T G
p-value:1e-11
log p-value:-2.586e+01
Information Content per bp:1.533
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.24%
Number of Background Sequences with motif311.2
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets45.0 +/- 30.1bp
Average Position of motif in Background50.3 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCATTGAAAT-
--ATTTGAATT
 T G A C A G T C T C G A A C G T G A C T A C T G C T G A G T C A T C G A G C A T A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

POU5F1B/MA0792.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCATTGAAAT-
--ATTTGCATA
 T G A C A G T C T C G A A C G T G A C T A C T G C T G A G T C A T C G A G C A T A C G T
A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCATTGAAAT----
NANTATTATAATTNNN
 A C G T A C G T T G A C A G T C T C G A A C G T G A C T A C T G C T G A G T C A T C G A G C A T A C G T A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

PB0005.1_Bbx_1/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCATTGAAAT-
NANTTCATTGAATTA
 A C G T A C G T A C G T A C G T T G A C A G T C T C G A A C G T G A C T A C T G C T G A G T C A T C G A G C A T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCATTGAAAT
CCTTTGATGT
 T G A C A G T C T C G A A C G T G A C T A C T G C T G A G T C A T C G A G C A T
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCATTGAAAT
CCTTTGAWGT
 T G A C A G T C T C G A A C G T G A C T A C T G C T G A G T C A T C G A G C A T
A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCATTGAAAT----
TTGAATGAAATTCGA
 A C G T T G A C A G T C T C G A A C G T G A C T A C T G C T G A G T C A T C G A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGAAAT-
CTCATTTGCATW
 A C G T T G A C A G T C T C G A A C G T G A C T A C T G C T G A G T C A T C G A G C A T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Sox11/MA0869.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGAAAT----
AACACTGAAATTGTT
 A C G T T G A C A G T C T C G A A C G T G A C T A C T G C T G A G T C A T C G A G C A T A C G T A C G T A C G T A C G T
T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGAAAT-
BTVATTWGCATA
 A C G T T G A C A G T C T C G A A C G T G A C T A C T G C T G A G T C A T C G A G C A T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A