Information for 2-TGTAAATTAG (Motif 7)

C G A T C A T G A G C T C T G A G T C A C G T A G A C T C G A T C T G A T A C G
Reverse Opposite:
A T G C G A C T C G T A C T G A G C A T A C G T G A C T T C G A G T A C G C T A
p-value:1e-11
log p-value:-2.645e+01
Information Content per bp:1.683
Number of Target Sequences with motif103.0
Percentage of Target Sequences with motif11.12%
Number of Background Sequences with motif2439.2
Percentage of Background Sequences with motif5.33%
Average Position of motif in Targets46.1 +/- 26.9bp
Average Position of motif in Background49.3 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU1F1/MA0784.1/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----TGTAAATTAG
AATATGCAAATTAG
 A C G T A C G T A C G T A C G T C G A T C A T G A G C T C T G A G T C A C G T A G A C T C G A T C T G A T A C G
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G

LHX2/MA0700.1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TGTAAATTAG-
-NNTAATTAGN
 C G A T C A T G A G C T C T G A G T C A C G T A G A C T C G A T C T G A T A C G A C G T
A C G T T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T

HESX1/MA0894.1/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TGTAAATTAG-
-NCCAATTANC
 C G A T C A T G A G C T C T G A G T C A C G T A G A C T C G A T C T G A T A C G A C G T
A C G T C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C

RAX/MA0718.1/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGTAAATTAG-
-GCCAATTAAC
 C G A T C A T G A G C T C T G A G T C A C G T A G A C T C G A T C T G A T A C G A C G T
A C G T T C A G A G T C G A T C G C T A G T C A C G A T G A C T C G T A C T G A G A T C

NOTO/MA0710.1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TGTAAATTAG-
-GCTAATTAGC
 C G A T C A T G A G C T C T G A G T C A C G T A G A C T C G A T C T G A T A C G A C G T
A C G T T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

mix-a/MA0621.1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGTAAATTAG-
AATTAATTAGT
 C G A T C A T G A G C T C T G A G T C A C G T A G A C T C G A T C T G A T A C G A C G T
C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T

EMX2/MA0886.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TGTAAATTAG-
-GCTAATTAGC
 C G A T C A T G A G C T C T G A G T C A C G T A G A C T C G A T C T G A T A C G A C G T
A C G T T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C

SHOX/MA0630.1/Jaspar

Match Rank:8
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TGTAAATTAG
--NCAATTAN
 C G A T C A T G A G C T C T G A G T C A C G T A G A C T C G A T C T G A T A C G
A C G T A C G T A G T C G A T C G C T A G T C A A G C T A G C T C G T A C T G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TGTAAATTAG
WATGCAAATGAG
 A C G T A C G T C G A T C A T G A G C T C T G A G T C A C G T A G A C T C G A T C T G A T A C G
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

PAX4/MA0068.2/Jaspar

Match Rank:10
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TGTAAATTAG
--CTAATTAG
 C G A T C A T G A G C T C T G A G T C A C G T A G A C T C G A T C T G A T A C G
A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G