Information for 5-ARYAYSCACTCRK (Motif 3)

C G T A C T G A A G C T C G T A A G T C A T G C A G T C C G T A G T A C A C G T A G T C C T G A A C G T
Reverse Opposite:
G T C A A G C T A C T G C G T A A C T G A C G T A C T G A T C G C T A G A C G T C T G A A G C T A C G T
p-value:1e-13
log p-value:-3.091e+01
Information Content per bp:1.827
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.3 +/- 26.3bp
Average Position of motif in Background62.9 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:forward strand
Alignment:ARYAYSCACTCRK-
---AGCCACTCAAG
 C G T A C T G A A G C T C G T A A G T C A T G C A G T C C G T A G T A C A C G T A G T C C T G A A C G T A C G T
A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:ARYAYSCACTCRK
---MRSCACTYAA
 C G T A C T G A A G C T C G T A A G T C A T G C A G T C C G T A G T A C A C G T A G T C C T G A A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:ARYAYSCACTCRK
---AASCACTCAA
 C G T A C T G A A G C T C G T A A G T C A T G C A G T C C G T A G T A C A C G T A G T C C T G A A C G T
A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ARYAYSCACTCRK
--CRCCCACGCA-
 C G T A C T G A A G C T C G T A A G T C A T G C A G T C C G T A G T A C A C G T A G T C C T G A A C G T
A C G T A C G T G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:ARYAYSCACTCRK-
----NSCACTYVAV
 C G T A C T G A A G C T C G T A A G T C A T G C A G T C C G T A G T A C A C G T A G T C C T G A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ARYAYSCACTCRK
---AAGCACTTAA
 C G T A C T G A A G C T C G T A A G T C A T G C A G T C C G T A G T A C A C G T A G T C C T G A A C G T
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:ARYAYSCACTCRK-
----RSCACTYRAG
 C G T A C T G A A G C T C G T A A G T C A T G C A G T C C G T A G T A C A C G T A G T C C T G A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ARYAYSCACTCRK--
NNAGTCCCACTCNNNN
 A C G T C G T A C T G A A G C T C G T A A G T C A T G C A G T C C G T A G T A C A C G T A G T C C T G A A C G T A C G T A C G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ARYAYSCACTCRK
---ATCCAC----
 C G T A C T G A A G C T C G T A A G T C A T G C A G T C C G T A G T A C A C G T A G T C C T G A A C G T
A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ARYAYSCACTCRK
ACTAGCCAATCA-
 C G T A C T G A A G C T C G T A A G T C A T G C A G T C C G T A G T A C A C G T A G T C C T G A A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T