Information for 2-ATTTGCATTTCAA (Motif 2)

C G T A G C A T A G C T C G A T T A C G G T A C G C T A G C A T G A C T C A G T T A G C G T C A G C T A
Reverse Opposite:
C G A T C A G T A T C G G T C A C T G A C G T A C G A T C A T G A T G C G C T A C T G A C G T A C G A T
p-value:1e-33
log p-value:-7.716e+01
Information Content per bp:1.563
Number of Target Sequences with motif110.0
Percentage of Target Sequences with motif13.08%
Number of Background Sequences with motif1580.9
Percentage of Background Sequences with motif3.28%
Average Position of motif in Targets48.0 +/- 24.9bp
Average Position of motif in Background50.1 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:ATTTGCATTTCAA--
ATTTGCATAACAATG
 C G T A G C A T A G C T C G A T T A C G G T A C G C T A G C A T G A C T C A G T T A G C G T C A G C T A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:ATTTGCATTTCAA--
ATTTGCATAACAAAG
 C G T A G C A T A G C T C G A T T A C G G T A C G C T A G C A T G A C T C A G T T A G C G T C A G C T A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---ATTTGCATTTCAA
TTCATTTGCATAT---
 A C G T A C G T A C G T C G T A G C A T A G C T C G A T T A C G G T A C G C T A G C A T G A C T C A G T T A G C G T C A G C T A
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.84
Offset:0
Orientation:forward strand
Alignment:ATTTGCATTTCAA
ATTTGCATAA---
 C G T A G C A T A G C T C G A T T A C G G T A C G C T A G C A T G A C T C A G T T A G C G T C A G C T A
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:ATTTGCATTTCAA
ATTTGCATAT---
 C G T A G C A T A G C T C G A T T A C G G T A C G C T A G C A T G A C T C A G T T A G C G T C A G C T A
G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---ATTTGCATTTCAA
BTVATTWGCATA----
 A C G T A C G T A C G T C G T A G C A T A G C T C G A T T A C G G T A C G C T A G C A T G A C T C A G T T A G C G T C A G C T A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---ATTTGCATTTCAA
CTCATTTGCATW----
 A C G T A C G T A C G T C G T A G C A T A G C T C G A T T A C G G T A C G C T A G C A T G A C T C A G T T A G C G T C A G C T A
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATTTCAA
TNTAATTTGCATACNA-
 A C G T A C G T A C G T A C G T C G T A G C A T A G C T C G A T T A C G G T A C G C T A G C A T G A C T C A G T T A G C G T C A G C T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATTTCAA
TNTAATTTGCATACNA-
 A C G T A C G T A C G T A C G T C G T A G C A T A G C T C G A T T A C G G T A C G C T A G C A T G A C T C A G T T A G C G T C A G C T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATTTCAA
TNTAATTTGCATANNN-
 A C G T A C G T A C G T A C G T C G T A G C A T A G C T C G A T T A C G G T A C G C T A G C A T G A C T C A G T T A G C G T C A G C T A
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A A C G T