Information for 24-TAGCTNAGCTACTTAT (Motif 40)

A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A A G T C C A G T A C G T C T G A A C G T
Reverse Opposite:
G T C A A G C T C G T A G C T A C T A G A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A
p-value:1e-7
log p-value:-1.751e+01
Information Content per bp:1.827
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.2 +/- 11.3bp
Average Position of motif in Background35.5 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TAGCTNAGCTACTTAT-
---TTGACCTANTTATN
 A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A A G T C C A G T A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TAGCTNAGCTACTTAT
TGTTKCCTAGCAACM---
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A A G T C C A G T A C G T C T G A A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T A C G T

PH0045.1_Hoxa1/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TAGCTNAGCTACTTAT---
---CTGAGCTAATTACCGT
 A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A A G T C C A G T A C G T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TAGCTNAGCTACTTAT
CCGCATAGCAACGGA-
 A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A A G T C C A G T A C G T C T G A A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TAGCTNAGCTACTTAT
TACCATAGCAACGGT-
 A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A A G T C C A G T A C G T C T G A A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

PH0036.1_Gsx2/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TAGCTNAGCTACTTAT---
---NTNNGCTAATTANCNT
 A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A A G T C C A G T A C G T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A G A C T T A G C T C G A C T A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C G A G A T C A T G C A G C T

MAFK/MA0496.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TAGCTNAGCTACTTAT
CTGAGTCAGCAATTT--
 A C G T A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A A G T C C A G T A C G T C T G A A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T

MAFF/MA0495.1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TAGCTNAGCTACTTAT
GCTGAGTCAGCAATTTTT
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A A G T C C A G T A C G T C T G A A C G T
A T C G G T A C G C A T C T A G C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A G C A T G C A T G C A T G A C T G C A T

PB0154.1_Osr1_2/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TAGCTNAGCTACTTAT---
---ACATGCTACCTAATAC
 A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A A G T C C A G T A C G T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

PH0103.1_Meox1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TAGCTNAGCTACTTAT---
---CTGAGGTAATTACCNC
 A C G T C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C G A T C G T A A G T C C A G T A C G T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C C G A T T C A G C T G A C A T G T A C G G A C T T G C A G C T A C A G T A C G T C T G A G T A C G T A C A C G T A G T C