Information for 5-GAAAAGTACC (Motif 38)

A T C G C T G A T G C A G C T A C G T A A C T G G A C T T C G A G A T C T G A C
Reverse Opposite:
A C T G C T A G A G C T C T G A T G A C G C A T C G A T A C G T G A C T T A G C
p-value:1e-8
log p-value:-1.852e+01
Information Content per bp:1.660
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.07%
Number of Background Sequences with motif316.2
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets40.1 +/- 23.4bp
Average Position of motif in Background49.7 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAAAAGTACC------
TTCNAAGTACTTNNNNN
 A C G T A T C G C T G A T G C A G C T A C G T A A C T G G A C T T C G A G A T C T G A C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAAAAGTACC
GGAAATTCCC
 A T C G C T G A T G C A G C T A C G T A A C T G G A C T T C G A G A T C T G A C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

DMRT3/MA0610.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAAAAGTACC---
--AATGTATCAAT
 A T C G C T G A T G C A G C T A C G T A A C T G G A C T T C G A G A T C T G A C A C G T A C G T A C G T
A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAAAAGTACC
TGGAAAA-----
 A C G T A C G T A T C G C T G A T G C A G C T A C G T A A C T G G A C T T C G A G A T C T G A C
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAAAAGTACC------------
--GAAGTANCACGAATNMRAGT
 A T C G C T G A T G C A G C T A C G T A A C T G G A C T T C G A G A T C T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAAAAGTACC
GGAAATTCCC
 A T C G C T G A T G C A G C T A C G T A A C T G G A C T T C G A G A T C T G A C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

PB0051.1_Osr2_1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAAAAGTACC----
ATGTACAGTAGCAAAG
 A C G T A C G T A T C G C T G A T G C A G C T A C G T A A C T G G A C T T C G A G A T C T G A C A C G T A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

NFAT5/MA0606.1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GAAAAGTACC
NATGGAAAAN----
 A C G T A C G T A C G T A C G T A T C G C T G A T G C A G C T A C G T A A C T G G A C T T C G A G A T C T G A C
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAAAAGTACC----
ATTTACAGTAGCAAAA
 A C G T A C G T A T C G C T G A T G C A G C T A C G T A A C T G G A C T T C G A G A T C T G A C A C G T A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

HLTF/MA0109.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAAAAGTACC
NNATAAGGNN-
 A C G T A T C G C T G A T G C A G C T A C G T A A C T G G A C T T C G A G A T C T G A C
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T