Information for 2-CAACTCAAACTCTGGG (Motif 3)

T A G C G T C A C T G A A T G C C G A T A G T C C G T A C T G A C G T A A T G C C A G T A T G C C G A T A C T G T C A G C T A G
Reverse Opposite:
A G T C A G T C A G T C C G T A T A C G G C T A T A C G C G A T A G C T A C G T A C T G C G T A A T C G A G C T A C G T A C T G
p-value:1e-14
log p-value:-3.383e+01
Information Content per bp:1.706
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.5 +/- 25.3bp
Average Position of motif in Background43.0 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CAACTCAAACTCTGGG
AGCCACTCAAG-------
 A C G T A C G T T A G C G T C A C T G A A T G C C G A T A G T C C G T A C T G A C G T A A T G C C A G T A T G C C G A T A C T G T C A G C T A G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:2
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CAACTCAAACTCTGGG
GAAAMTGAAACT-----
 A C G T T A G C G T C A C T G A A T G C C G A T A G T C C G T A C T G A C G T A A T G C C A G T A T G C C G A T A C T G T C A G C T A G
C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CAACTCAAACTCTGGG
GAAACTGAAACT-----
 A C G T T A G C G T C A C T G A A T G C C G A T A G T C C G T A C T G A C G T A A T G C C A G T A T G C C G A T A C T G T C A G C T A G
T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T A C G T A C G T A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:4
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:CAACTCAAACTCTGGG
-------NNNANTGA-
 T A G C G T C A C T G A A T G C C G A T A G T C C G T A C T G A C G T A A T G C C A G T A T G C C G A T A C T G T C A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:5
Score:0.48
Offset:1
Orientation:forward strand
Alignment:CAACTCAAACTCTGGG
-ACATCAAAGGNA---
 T A G C G T C A C T G A A T G C C G A T A G T C C G T A C T G A C G T A A T G C C A G T A T G C C G A T A C T G T C A G C T A G
A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-CAACTCAAACTCTGGG
AAAAGTCAA--------
 A C G T T A G C G T C A C T G A A T G C C G A T A G T C C G T A C T G A C G T A A T G C C A G T A T G C C G A T A C T G T C A G C T A G
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.47
Offset:1
Orientation:forward strand
Alignment:CAACTCAAACTCTGGG
-ACATCAAAGG-----
 T A G C G T C A C T G A A T G C C G A T A G T C C G T A C T G A C G T A A T G C C A G T A T G C C G A T A C T G T C A G C T A G
A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.47
Offset:-2
Orientation:forward strand
Alignment:--CAACTCAAACTCTGGG
AASCACTCAA--------
 A C G T A C G T T A G C G T C A C T G A A T G C C G A T A G T C C G T A C T G A C G T A A T G C C A G T A T G C C G A T A C T G T C A G C T A G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-CAACTCAAACTCTGGG
GAAAGTGAAAGT-----
 A C G T T A G C G T C A C T G A A T G C C G A T A G T C C G T A C T G A C G T A A T G C C A G T A T G C C G A T A C T G T C A G C T A G
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.47
Offset:8
Orientation:forward strand
Alignment:CAACTCAAACTCTGGG--
--------WDNCTGGGCA
 T A G C G T C A C T G A A T G C C G A T A G T C C G T A C T G A C G T A A T G C C A G T A T G C C G A T A C T G T C A G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A