Information for 9-CGDCAGCCAGGGA (Motif 16)

A G T C A C T G C T G A G T A C C G T A T A C G A G T C A G T C C G T A A C T G A C T G A T C G C T G A
Reverse Opposite:
A G C T A T G C A G T C A G T C A C G T A C T G A C T G A T G C A C G T A C T G G A C T A G T C A C T G
p-value:1e-7
log p-value:-1.637e+01
Information Content per bp:1.848
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif12.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets52.2 +/- 23.5bp
Average Position of motif in Background38.0 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Znf423/MA0116.1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CGDCAGCCAGGGA---
-GGCACCCAGGGGTGC
 A G T C A C T G C T G A G T A C C G T A T A C G A G T C A G T C C G T A A C T G A C T G A T C G C T G A A C G T A C G T A C G T
A C G T T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CGDCAGCCAGGGA----
--SCAGYCADGCATGAC
 A G T C A C T G C T G A G T A C C G T A T A C G A G T C A G T C C G T A A C T G A C T G A T C G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CGDCAGCCAGGGA---
------VCAGGTRDRY
 A G T C A C T G C T G A G T A C C G T A T A C G A G T C A G T C C G T A A C T G A C T G A T C G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CGDCAGCCAGGGA
GCCACACCCA----
 A C G T A G T C A C T G C T G A G T A C C G T A T A C G A G T C A G T C C G T A A C T G A C T G A T C G C T G A
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CGDCAGCCAGGGA
----TGCCAA---
 A G T C A C T G C T G A G T A C C G T A T A C G A G T C A G T C C G T A A C T G A C T G A T C G C T G A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CGDCAGCCAGGGA
---ATGCCAGACN
 A G T C A C T G C T G A G T A C C G T A T A C G A G T C A G T C C G T A A C T G A C T G A T C G C T G A
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CGDCAGCCAGGGA-
--GTCCCCAGGGGA
 A G T C A C T G C T G A G T A C C G T A T A C G A G T C A G T C C G T A A C T G A C T G A T C G C T G A A C G T
A C G T A C G T C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CGDCAGCCAGGGA
TGACANARRCCAGRC-
 A C G T A C G T A C G T A G T C A C T G C T G A G T A C C G T A T A C G A G T C A G T C C G T A A C T G A C T G A T C G C T G A
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CGDCAGCCAGGGA
GGCCACACCCAN---
 A C G T A C G T A G T C A C T G C T G A G T A C C G T A T A C G A G T C A G T C C G T A A C T G A C T G A T C G C T G A
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CGDCAGCCAGGGA
--CGTGCCAAG--
 A G T C A C T G C T G A G T A C C G T A T A C G A G T C A G T C C G T A A C T G A C T G A T C G C T G A
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T