Information for 5-ACAATGGAAA (Motif 4)

C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A
Reverse Opposite:
G A C T C G A T G C A T A G T C G T A C G C T A C G A T A C G T A T C G C G A T
p-value:1e-17
log p-value:-4.101e+01
Information Content per bp:1.742
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.73%
Number of Background Sequences with motif505.1
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets52.2 +/- 29.4bp
Average Position of motif in Background48.9 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGAAA
VRAACAATGG---
 A C G T A C G T A C G T C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGAAA
AACAAAGG---
 A C G T C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--ACAATGGAAA
RAACAATGGN--
 A C G T A C G T C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGAAA
RACAAWGG---
 A C G T C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGAAA
VRRACAAWGG---
 A C G T A C G T A C G T C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----ACAATGGAAA-
AATGAACAATGGAATT
 A C G T A C G T A C G T A C G T A C G T C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--ACAATGGAAA
GAACAATGGN--
 A C G T A C G T C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGAAA
GACAATGNN--
 A C G T C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGAAA
RNAACAATGG---
 A C G T A C G T A C G T C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--ACAATGGAAA
GAACAATGG---
 A C G T A C G T C G T A A T G C G T C A G C T A C G A T C A T G T C A G C G T A G C T A C T G A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T