Information for 20-CTCTCCTCATTCACRG (Motif 28)

A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G
Reverse Opposite:
G T A C G A C T C A T G A C G T A T C G C T G A G T C A C G A T C T A G C G T A A C T G A T C G C G T A A C T G C G T A C T A G
p-value:1e-10
log p-value:-2.410e+01
Information Content per bp:1.745
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets62.6 +/- 28.9bp
Average Position of motif in Background66.2 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTCTCCTCATTCACRG---
--GACCACATTCATACAAT
 A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G A C G T A C G T A C G T
A C G T A C G T T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

SREBF1/MA0595.1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTCTCCTCATTCACRG
ATCACCCCAC------
 A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G
T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CTCTCCTCATTCACRG----
------ACATTCATGACACG
 A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PH0151.1_Pou6f1_1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTCTCCTCATTCACRG-
NNNACCTCATTATCNTN
 A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

SREBF2/MA0596.1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTCTCCTCATTCACRG
ATCACCCCAT------
 A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G
C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CTCTCCTCATTCACRG
--ATCCAC--------
 A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G
A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CTCTCCTCATTCACRG
CCTCACCTG--------
 A C G T A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:8
Score:0.49
Offset:3
Orientation:forward strand
Alignment:CTCTCCTCATTCACRG
---AGCTCATTAT---
 A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G
A C G T A C G T A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CTCTCCTCATTCACRG
NWAACCACADNN----
 A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---CTCTCCTCATTCACRG
NNACTTACCTN--------
 A C G T A C G T A C G T A G T C G C A T A G T C C G A T A T G C A G T C C G A T A G T C G C T A A C G T A G C T A T G C C G T A G A T C C T G A A C T G
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T