Information for 13-RRCTMWCACWAAKYMY (Motif 17)

T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T
Reverse Opposite:
C T G A A C G T C T G A G T A C A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C T G C G T A A C T G A G C T A G C T
p-value:1e-12
log p-value:-2.797e+01
Information Content per bp:1.780
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.6 +/- 18.5bp
Average Position of motif in Background19.4 +/- 8.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA5/MA0158.1/Jaspar

Match Rank:1
Score:0.59
Offset:6
Orientation:forward strand
Alignment:RRCTMWCACWAAKYMY
------CACTAATT--
 T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RRCTMWCACWAAKYMY-
-AAACAGACAAAGGAAT
 T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RRCTMWCACWAAKYMY
-ACCGTGACTAATTNN
 T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T
A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PH0039.1_Mnx1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:RRCTMWCACWAAKYMY---
---NNNCACTAATTANTNN
 T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RRCTMWCACWAAKYMY
GSCTGTCACTCA----
 T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RRCTMWCACWAAKYMY-
--CTCACACAATGGCGC
 T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T A C G T
A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-RRCTMWCACWAAKYMY
TGTCTGDCACCT-----
 A C G T T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

PH0008.1_Barx2/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:RRCTMWCACWAAKYMY---
---NANAANTAATTANTTA
 T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T G A G A C T G T C A T C G A A G T C G A C T G T C A G C T A C A G T C A G T C T G A T G A C A G C T C G A T C G T A

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:RRCTMWCACWAAKYMY
-------ACAAAG---
 T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T

PH0062.1_Hoxb7/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:RRCTMWCACWAAKYMY---
---TNNCATTAATTANTNC
 T C G A C T G A A G T C A C G T G T A C C G A T A G T C C G T A A G T C C G A T G T C A C G T A A C T G A G C T G T C A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C G A T T A C G G T A C T G C A A C G T G A C T G T C A G C T A C G A T C A G T C T G A T G A C A C G T T C G A T A G C