Information for 6-CAGCAGAGGGAVCTCB (Motif 7)

A T G C C T G A A C T G G T A C C G T A A C T G C G T A A C T G C T A G A C T G G T C A T A C G G T A C A C G T A T G C A C G T
Reverse Opposite:
T C G A A T C G C G T A A C T G A G T C A C G T A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G C T A T C G
p-value:1e-13
log p-value:-3.025e+01
Information Content per bp:1.819
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.7 +/- 18.7bp
Average Position of motif in Background88.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGAGGGAVCTCB--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A T G C C T G A A C T G G T A C C G T A A C T G C G T A A C T G C T A G A C T G G T C A T A C G G T A C A C G T A T G C A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CAGCAGAGGGAVCTCB
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A T G C C T G A A C T G G T A C C G T A A C T G C G T A A C T G C T A G A C T G G T C A T A C G G T A C A C G T A T G C A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CAGCAGAGGGAVCTCB
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A T G C C T G A A C T G G T A C C G T A A C T G C G T A A C T G C T A G A C T G G T C A T A C G G T A C A C G T A T G C A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGAGGGAVCTCB
CACAGCAGGGGG------
 A C G T A C G T A T G C C T G A A C T G G T A C C G T A A C T G C G T A A C T G C T A G A C T G G T C A T A C G G T A C A C G T A T G C A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAGCAGAGGGAVCTCB
-AACAGATGGC-----
 A T G C C T G A A C T G G T A C C G T A A C T G C G T A A C T G C T A G A C T G G T C A T A C G G T A C A C G T A T G C A C G T
A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAGCAGAGGGAVCTCB
-AACAGATGGT-----
 A T G C C T G A A C T G G T A C C G T A A C T G C G T A A C T G C T A G A C T G G T C A T A C G G T A C A C G T A T G C A C G T
A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGAGGGAVCTCB
DCHCAGCAGGRGGCC----
 A C G T A C G T A C G T A T G C C T G A A C T G G T A C C G T A A C T G C G T A A C T G C T A G A C T G G T C A T A C G G T A C A C G T A T G C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGAGGGAVCTCB
CACAGCGGGGGGTC----
 A C G T A C G T A T G C C T G A A C T G G T A C C G T A A C T G C G T A A C T G C T A G A C T G G T C A T A C G G T A C A C G T A T G C A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGAGGGAVCTCB
NCGCAGCGGGGGGTC----
 A C G T A C G T A C G T A T G C C T G A A C T G G T A C C G T A A C T G C G T A A C T G C T A G A C T G G T C A T A C G G T A C A C G T A T G C A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CAGCAGAGGGAVCTCB
--CCAGACRSVB----
 A T G C C T G A A C T G G T A C C G T A A C T G C G T A A C T G C T A G A C T G G T C A T A C G G T A C A C G T A T G C A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T